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protocols::denovo_design::movers::RotateSegmentMover Class Reference

Rotates a segment in the pose. More...

#include <RotateSegmentMover.hh>

Inheritance diagram for protocols::denovo_design::movers::RotateSegmentMover:
Inheritance graph

Public Types

typedef utility::vector1
< std::string > 
typedef utility::vector1
< std::string > 
typedef utility::vector1
< core::id::AtomID
- Public Types inherited from protocols::moves::Mover
typedef utility::tag::TagCOP TagCOP
typedef core::pose::Pose Pose
typedef core::pose::PoseCOP PoseCOP
typedef std::list< std::string > Strings

Public Member Functions

 RotateSegmentMover ()
 ~RotateSegmentMover () override
void apply (core::pose::Pose &pose) override
 Main Method. More...
std::string get_name () const override
 Each derived class must specify its name. The class name. More...
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data) override
 parse XML tag (to use this Mover in Rosetta Scripts) More...
protocols::moves::MoverOP fresh_instance () const override
 Generates a new Mover object freshly created with the default ctor. More...
protocols::moves::MoverOP clone () const override
 Return a clone of the Mover object. More...
void apply (core::pose::Pose &pose, core::Real const random) const
void set_rotation_range (core::Real const start, core::Real const stop)
- Public Member Functions inherited from protocols::moves::Mover
 Mover ()
virtual MoverOP create ()
MoverCOP get_self_ptr () const
MoverOP get_self_ptr ()
MoverCAP get_self_weak_ptr () const
MoverAP get_self_weak_ptr ()
 Mover (std::string const &type_name)
 sets the type for a mover; name_ has been removed (2010/05/14) More...
virtual void test_move (Pose &pose)
 : Unit test support function. Apply one move to a given pose. Allows extra test specific functions to be called before applying More...
virtual bool reinitialize_for_each_job () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be freshly regenerated on each use. More...
virtual bool reinitialize_for_new_input () const
 Inform the Job Distributor (August '08 vintage) whether this object needs to be regenerated when the input pose is about to change, (for example, if the Mover has special code on the first apply() that is only valid for that one input pose). More...
MoverStatus get_last_move_status () const
 end parser interface, start Job Distributor interface///////////// More...
void reset_status ()
 resets status to SUCCESS, meant to be used before an apply(). The job distributor (august 08 vintage) uses this to ensure non-accumulation of status across apply()s. More...
virtual core::pose::PoseOP get_additional_output ()
 Mechanism by which a mover may return multiple output poses from a single input pose. More...
void set_type (std::string const &setting)
 Set the 'type' string. More...
std::string get_type () const
void type (const std::string &type_in)
 Set the 'type' string. More...
std::string const & type () const
 Get the set 'type' string. More...
virtual void set_input_pose (PoseCOP pose)
 setter for poses contained for rms More...
virtual void set_native_pose (PoseCOP pose)
 setter for native poses contained for rms -— we should get rid of this method? it is widely used, but a bit unsafe More...
PoseCOP get_input_pose () const
PoseCOP get_native_pose () const
void set_current_job (protocols::jobdist::BasicJobCOP job)
jobdist::BasicJobCOP get_current_job () const
virtual void set_current_tag (std::string const &new_tag)
std::string get_current_tag () const
 A tag is a unique identifier used to identify structures produced by this Mover. get_current_tag() returns the tag, and set_current_tag( std::string tag ) sets the tag. This functionality is not intended for use with the 2008 job distributor. More...
virtual void show (std::ostream &output=std::cout) const
 Outputs details about the Mover, including current settings. More...
virtual core::Real last_proposal_density_ratio ()
virtual void clear_info ()
 Strings container can be used to return miscellaneous info (as std::string) from a mover, such as notes about the results of apply(). The job distributor (Apr 09 vintage) will check this function to see if your protocol wants to add string info to the Job that ran this mover. One way this can be useful is that later, a JobOutputter may include/append this info to an output file. More...
virtual Stringsinfo ()
 non-const accessor More...
virtual Strings const & info () const
 const accessor More...
virtual bool mover_provides_citation_info () const
 Does this mover provide information about how to cite it? More...
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
virtual bool mover_is_unpublished () const
 Does this mover indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...

Static Public Member Functions

static std::string class_name ()
- Static Public Member Functions inherited from protocols::moves::Mover
static std::string name ()
static void register_options ()
 Overload this static method if you access options within the mover. More...

Private Member Functions

core::Real select_rotation (core::Real const random) const
AtomIDs target_atoms (core::pose::Pose const &pose, components::StructureData const &sd) const

Private Attributes

RotationRange range_
Residues residues_
Atoms atoms_
SegmentNames frozen_segments_

Additional Inherited Members

- Protected Member Functions inherited from protocols::moves::Mover
void set_last_move_status (MoverStatus status)
 nonvirtual setter for MoverStatus last_status_. Protected means that only the mover itself will be able to change its own status. The job distributor (august 08 vintage) is aware of status set with this function and will do what the MoverStatus says. More...

Detailed Description

Rotates a segment in the pose.

Member Typedef Documentation

typedef utility::vector1< std::string > protocols::denovo_design::movers::RotateSegmentMover::Atoms
typedef utility::vector1< std::string > protocols::denovo_design::movers::RotateSegmentMover::Residues

Constructor & Destructor Documentation

protocols::denovo_design::movers::RotateSegmentMover::RotateSegmentMover ( )
protocols::denovo_design::movers::RotateSegmentMover::~RotateSegmentMover ( )

Member Function Documentation

void protocols::denovo_design::movers::RotateSegmentMover::apply ( core::pose::Pose )

Main Method.

Implements protocols::moves::Mover.

References core::scoring::rg.

void protocols::denovo_design::movers::RotateSegmentMover::apply ( core::pose::Pose pose,
core::Real const  random 
) const
std::string protocols::denovo_design::movers::RotateSegmentMover::class_name ( )
protocols::moves::MoverOP protocols::denovo_design::movers::RotateSegmentMover::clone ( ) const

Return a clone of the Mover object.

clone is meant to return an OP'ed deep copy of this object. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function.

Reimplemented from protocols::moves::Mover.

moves::MoverOP protocols::denovo_design::movers::RotateSegmentMover::fresh_instance ( ) const

Generates a new Mover object freshly created with the default ctor.

fresh_instance is meant to return a new object of this class, created with the default constructor. This really should be a pure virtual in the base class, but adding pure virtuals to Mover would massively disrupt the code. This default implementation crashes at runtime instead of compiletime if you try to call it. If this code is causing you problems, your Mover needs to override this function. This is used by the August 08 job distributor.

Reimplemented from protocols::moves::Mover.

std::string protocols::denovo_design::movers::RotateSegmentMover::get_name ( ) const

Each derived class must specify its name. The class name.

Implements protocols::moves::Mover.

References class_name().

void protocols::denovo_design::movers::RotateSegmentMover::parse_my_tag ( utility::tag::TagCOP  tag,
basic::datacache::DataMap &  data 

parse XML tag (to use this Mover in Rosetta Scripts)

Reimplemented from protocols::moves::Mover.

core::Real protocols::denovo_design::movers::RotateSegmentMover::select_rotation ( core::Real const  random) const
void protocols::denovo_design::movers::RotateSegmentMover::set_rotation_range ( core::Real const  start,
core::Real const  stop 

References range_.

RotateSegmentMover::AtomIDs protocols::denovo_design::movers::RotateSegmentMover::target_atoms ( core::pose::Pose const &  pose,
components::StructureData const &  sd 
) const

Member Data Documentation

Atoms protocols::denovo_design::movers::RotateSegmentMover::atoms_

Referenced by target_atoms().

SegmentNames protocols::denovo_design::movers::RotateSegmentMover::frozen_segments_

Referenced by apply().

RotationRange protocols::denovo_design::movers::RotateSegmentMover::range_
Residues protocols::denovo_design::movers::RotateSegmentMover::residues_

Referenced by target_atoms().

The documentation for this class was generated from the following files: