protocols::jumping::StandardPairingLibrary Class Reference

This class is thread-unsafe, though, if perhaps none of its non-const functions were accessible, then it wouldn't be. More...

#include <PairingLibrary.hh>

Inheritance diagram for protocols::jumping::StandardPairingLibrary:

Private Member Functions
	StandardPairingLibrary ()

Friends
class	utility::SingletonBase< StandardPairingLibrary >

Additional Inherited Members
Public Types inherited from protocols::jumping::PairingLibrary
typedef std::vector < PairingTemplate >	PairingTemplateList
typedef std::map< std::pair < int, int > , PairingTemplateList >	PairingTemplateMap
Public Member Functions inherited from protocols::jumping::PairingLibrary
	PairingLibrary ()
void	read_from_file (std::string const &fn)
void	read_from_file_no_filters (std::string const &fn)
core::kinematics::RT	get_random_beta_sheet_jump (int const orientation, int const pleating) const
	classic rosetta++ accessor More...
core::kinematics::RT	get_random_tmh_jump (int const orientation, int const pos1, int const pos2) const
	classic rosetta++ accessor More...
void	set_tmh_jump (core::pose::Pose pose, int const jump_number, int const orientation, int const pos1, int const pos2) const
void	create_jump_fragments (int const orientation, int const pleating, bool bWithTorsion, core::fragment::FragDataOPs &) const override
	puts all jump-geometries that fit the orientation and pleating into list of FragData's. Try to reuse these FragData for different Frames that have same orientation and pleating This creates Fragments with single JumpSRFD — PairingLibrary also stores phi/psi/omega of start and end residue use bWithTorsion = true to get FragData with BBTorsionSRFD and JumpSRFD length of single FragData is noTorsion 1 withTorsion 3 bWithTorsion = true length of single FragData is 3 start jump end More...
core::Size	size () const
void	generate_jump_frags (core::scoring::dssp::PairingsList const &pairings, core::kinematics::MoveMap const &mm, bool bWithTorsion, core::fragment::FragSet &frags_accumulator) override
Public Member Functions inherited from protocols::jumping::BasePairingLibrary
	~BasePairingLibrary () override

Detailed Description

This class is thread-unsafe, though, if perhaps none of its non-const functions were accessible, then it wouldn't be.

Constructor & Destructor Documentation

protocols::jumping::StandardPairingLibrary::StandardPairingLibrary ( )

private

References protocols::jumping::PairingLibrary::read_from_file().

Friends And Related Function Documentation

friend class utility::SingletonBase< StandardPairingLibrary >

friend

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The documentation for this class was generated from the following files:

• src/protocols/jumping/PairingLibrary.hh
• src/protocols/jumping/PairingLibrary.cc