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core::scoring::epr_deer::metrics Namespace Reference

Classes

class  DEERChiSqMethod
 
class  DEERData
 Base class. More...
 
class  DEERDecayData
 Derived class that stores DEER decay data. More...
 
class  DEERDistanceBounds
 Derived class for storing the data as a bounded function. Contains the upper and lower bounds, as well as steepness. If the average simulated distance falls within these bounds the score is zero If the average falls outside, it is evaluated via the steepness For example: ( ( lb - d ) / s ) ^2 OR ( ( d - ub ) / s ) ^2 lb: Lower bound ub: Upper bound d: Avg distance s: Steepness. More...
 
class  DEERDistanceDistribution
 
class  DEERJaccardMethod
 
class  DEERJSMethod
 
class  DEERMiscMethod
 
class  DEEROverlapMethod
 

Typedefs

typedef
utility::pointer::shared_ptr
< DEERChiSqMethod
DEERChiSqMethodOP
 
typedef
utility::pointer::shared_ptr
< DEERChiSqMethod const > 
DEERChiSqMethodCOP
 
typedef
utility::pointer::shared_ptr
< DEERData
DEERDataOP
 
typedef
utility::pointer::shared_ptr
< DEERData const > 
DEERDataCOP
 
using PairSizeString = std::pair< Size, std::string >
 Alias to save space when defining residues and spin labels. More...
 
typedef
utility::pointer::shared_ptr
< DEERDecayData
DEERDecayDataOP
 
typedef
utility::pointer::shared_ptr
< DEERDecayData const > 
DEERDecayDataCOP
 
typedef
utility::pointer::shared_ptr
< DEERDistanceBounds
DEERDistanceBoundsOP
 
typedef
utility::pointer::shared_ptr
< DEERDistanceBounds const > 
DEERDistanceBoundsCOP
 
typedef
utility::pointer::shared_ptr
< DEERDistanceDistribution
DEERDistanceDistributionOP
 
typedef
utility::pointer::shared_ptr
< DEERDistanceDistribution
const > 
DEERDistanceDistributionCOP
 
typedef
utility::pointer::shared_ptr
< DEERJaccardMethod
DEERJaccardMethodOP
 
typedef
utility::pointer::shared_ptr
< DEERJaccardMethod const > 
DEERJaccardMethodCOP
 
typedef
utility::pointer::shared_ptr
< DEERJSMethod
DEERJSMethodOP
 
typedef
utility::pointer::shared_ptr
< DEERJSMethod const > 
DEERJSMethodCOP
 
typedef
utility::pointer::shared_ptr
< DEERMiscMethod
DEERMiscMethodOP
 
typedef
utility::pointer::shared_ptr
< DEERMiscMethod const > 
DEERMiscMethodCOP
 
typedef
utility::pointer::shared_ptr
< DEEROverlapMethod
DEEROverlapMethodOP
 
typedef
utility::pointer::shared_ptr
< DEEROverlapMethod const > 
DEEROverlapMethodCOP
 

Functions

static basic::Tracer TR ("core.scoring.epr_deer.metrics.DEERData")
 Tracer used for error messages. More...
 
static basic::Tracer TR ("core.scoring.epr_deer.metrics.DEERDecayData")
 Tracer used for error messages. More...
 
static basic::Tracer TR ("core.scoring.epr_deer.metrics.DEERDistanceDistribution")
 Tracer used for error messages. More...
 

Typedef Documentation

typedef utility::pointer::shared_ptr< DEERChiSqMethod const > core::scoring::epr_deer::metrics::DEERChiSqMethodCOP
typedef utility::pointer::shared_ptr< DEERData const > core::scoring::epr_deer::metrics::DEERDataCOP
typedef utility::pointer::shared_ptr< DEERData > core::scoring::epr_deer::metrics::DEERDataOP
typedef utility::pointer::shared_ptr< DEERDecayData const > core::scoring::epr_deer::metrics::DEERDecayDataCOP
typedef utility::pointer::shared_ptr< DEERDecayData > core::scoring::epr_deer::metrics::DEERDecayDataOP
typedef utility::pointer::shared_ptr< DEERDistanceBounds const > core::scoring::epr_deer::metrics::DEERDistanceBoundsCOP
typedef utility::pointer::shared_ptr< DEERJaccardMethod const > core::scoring::epr_deer::metrics::DEERJaccardMethodCOP
typedef utility::pointer::shared_ptr< DEERJSMethod const > core::scoring::epr_deer::metrics::DEERJSMethodCOP
typedef utility::pointer::shared_ptr< DEERJSMethod > core::scoring::epr_deer::metrics::DEERJSMethodOP
typedef utility::pointer::shared_ptr< DEERMiscMethod const > core::scoring::epr_deer::metrics::DEERMiscMethodCOP
typedef utility::pointer::shared_ptr< DEERMiscMethod > core::scoring::epr_deer::metrics::DEERMiscMethodOP
typedef utility::pointer::shared_ptr< DEEROverlapMethod const > core::scoring::epr_deer::metrics::DEEROverlapMethodCOP
using core::scoring::epr_deer::metrics::PairSizeString = typedef std::pair< Size, std::string >

Alias to save space when defining residues and spin labels.

Function Documentation

static basic::Tracer core::scoring::epr_deer::metrics::TR ( "core.scoring.epr_deer.metrics.DEERDistanceDistribution"  )
static

Tracer used for error messages.

Global to avoid re-instantiating tracer with every new object

static basic::Tracer core::scoring::epr_deer::metrics::TR ( "core.scoring.epr_deer.metrics.DEERData"  )
static

Tracer used for error messages.

Global to avoid re-instantiating tracer with every new object

Referenced by core::scoring::epr_deer::metrics::DEERData::print_histogram().

static basic::Tracer core::scoring::epr_deer::metrics::TR ( "core.scoring.epr_deer.metrics.DEERDecayData"  )
static

Tracer used for error messages.

Global to avoid re-instantiating tracer with every new object