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MatDesGreedyOptMutationMover.cc File Reference
#include <protocols/matdes/MatDesPointMutationCalculator.hh>
#include <protocols/matdes/MatDesGreedyOptMutationMover.hh>
#include <protocols/design_opt/GreedyOptMutationMover.hh>
#include <protocols/matdes/MatDesGreedyOptMutationMoverCreator.hh>
#include <protocols/simple_filters/DeltaFilter.hh>
#include <protocols/task_operations/DesignAroundOperation.hh>
#include <core/pose/PDBInfo.hh>
#include <fstream>
#include <iostream>
#include <numeric/random/random.hh>
#include <numeric/random/random_permutation.hh>
#include <core/chemical/ResidueType.fwd.hh>
#include <core/pose/Pose.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/Residue.hh>
#include <utility/tag/Tag.hh>
#include <protocols/filters/Filter.hh>
#include <basic/Tracer.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/PackerTask.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <core/pack/pack_rotamers.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/chemical/ResidueType.hh>
#include <utility/vector1.hh>
#include <protocols/moves/Mover.hh>
#include <protocols/jd2/util.hh>
#include <protocols/rigid/RigidBodyMover.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <utility/vector0.hh>
#include <core/pose/symmetry/util.hh>
#include <utility/string_util.hh>
#include <utility/io/ozstream.hh>
#include <protocols/simple_filters/TaskAwareScoreTypeFilter.hh>
#include <protocols/task_operations/STMStoredTask.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <basic/datacache/CacheableData.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/option.hh>
#include <core/import_pose/import_pose.hh>
#include <utility/excn/Exceptions.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::matdes
 

Functions

static basic::Tracer protocols::matdes::TR ("protocols.matdes.MatDesGreedyOptMutationMover")
 
bool protocols::matdes::cmp_pair_by_second (pair< core::Size, Real > const pair1, pair< core::Size, Real > const pair2)
 
bool protocols::matdes::cmp_pair_by_first_vec_val (pair< AA, vector1< Real > > const pair1, pair< AA, vector1< Real > > const pair2)
 
bool protocols::matdes::cmp_pair_vec_by_first_vec_val (pair< core::Size, vector1< pair< AA, vector1< Real > > > > const pair1, pair< core::Size, vector1< pair< AA, vector1< Real > > > > const pair2)
 
void protocols::matdes::calc_pareto_front_nbrs (vector1< vector1< Real > > coords, vector1< bool > const &is_pfront, vector1< bool > &is_pfront_nbr, vector1< Real > const &nbr_dist)
 
void protocols::matdes::calc_pareto_front (vector1< vector1< Real > > coords, vector1< bool > &is_pfront, vector1< Real > const &coord_perts, bool const div, bool const incl_nbrs)