protocols::simple_filters::ChainCountFilter Class Reference

detects atomic contacts between two atoms of two residues More...

#include <ChainCountFilter.hh>

Inheritance diagram for protocols::simple_filters::ChainCountFilter:

Public Member Functions
	ChainCountFilter ()
	default ctor More...
bool	apply (core::pose::Pose const &pose) const override
core::Real	compute (core::pose::Pose const &pose) const
void	report (std::ostream &out, core::pose::Pose const &pose) const override
core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...
filters::FilterOP	clone () const override
filters::FilterOP	fresh_instance () const override
void	threshold (core::Size threshold)
core::Size	threshold () const
	~ChainCountFilter () override=default
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	~Filter () override
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Types
typedef protocols::filters::Filter	parent

Private Attributes
core::Size	threshold_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

detects atomic contacts between two atoms of two residues

Member Typedef Documentation

parent

typedef protocols::filters::Filter protocols::simple_filters::ChainCountFilter::parent

private

Constructor & Destructor Documentation

ChainCountFilter()

protocols::simple_filters::ChainCountFilter::ChainCountFilter

(

)

default ctor

~ChainCountFilter()

protocols::simple_filters::ChainCountFilter::~ChainCountFilter ( )

overridedefault

Member Function Documentation

apply()

bool protocols::simple_filters::ChainCountFilter::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Returns

Whether the atom pair is within the cutoff

Implements protocols::filters::Filter.

References compute(), report(), threshold_, and protocols::simple_filters::TR().

class_name()

std::string protocols::simple_filters::ChainCountFilter::class_name ( )

static

Referenced by protocols::simple_filters::ChainCountFilterCreator::keyname(), name(), and provide_xml_schema().

clone()

filters::FilterOP protocols::simple_filters::ChainCountFilter::clone ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

compute()

core::Real protocols::simple_filters::ChainCountFilter::compute

(

core::pose::Pose const &

pose

)

const

References core::pose::Pose::num_chains().

Referenced by apply(), report(), and report_sm().

fresh_instance()

filters::FilterOP protocols::simple_filters::ChainCountFilter::fresh_instance ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

name()

std::string protocols::simple_filters::ChainCountFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

parse_my_tag()

void protocols::simple_filters::ChainCountFilter::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References threshold().

provide_xml_schema()

void protocols::simple_filters::ChainCountFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::simple_filters::ChainCountFilterCreator::provide_xml_schema().

report()

void protocols::simple_filters::ChainCountFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute(), and core::conformation::membrane::out.

Referenced by apply().

report_sm()

core::Real protocols::simple_filters::ChainCountFilter::report_sm ( core::pose::Pose const &  ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

threshold() [1/2]

core::Size protocols::simple_filters::ChainCountFilter::threshold ( ) const

inline

References threshold_.

Referenced by parse_my_tag().

threshold() [2/2]

void protocols::simple_filters::ChainCountFilter::threshold ( core::Size  threshold )

inline

References threshold(), and threshold_.

Referenced by threshold().

Member Data Documentation

threshold_

core::Size protocols::simple_filters::ChainCountFilter::threshold_

private

Referenced by apply(), and threshold().

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The documentation for this class was generated from the following files:

• src/protocols/simple_filters/ChainCountFilter.hh
• src/protocols/simple_filters/ChainCountFilter.cc