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protocols::task_operations::RestrictResiduesToRepackingOperation Class Reference

#include <RestrictResiduesToRepackingOperation.hh>

Inheritance diagram for protocols::task_operations::RestrictResiduesToRepackingOperation:
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Public Types

typedef RestrictOperationsBase parent
 
- Public Types inherited from protocols::task_operations::RestrictOperationsBase
typedef
core::pack::task::operation::TaskOperation 
TaskOperation
 
typedef
core::pack::task::operation::TaskOperationOP 
TaskOperationOP
 
typedef TaskOperation parent
 
- Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 
typedef pose::Pose Pose
 

Public Member Functions

 RestrictResiduesToRepackingOperation ()
 
 RestrictResiduesToRepackingOperation (utility::vector1< core::Size > const &residues)
 
utility::vector1< core::Sizeget_residues () const
 
void set_residues (utility::vector1< core::Size > residues_vec)
 
 ~RestrictResiduesToRepackingOperation () override
 
TaskOperationOP clone () const override
 Create another task operation of the type matching the most-derived version of the class. More...
 
void apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
 Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
 
void parse_tag (TagCOP, DataMap &) override
 Used to parse an xml-like tag to load parameters and properties. More...
 
std::string reference_pdb_id () const
 
void reference_pdb_id (std::string const &s)
 
- Public Member Functions inherited from protocols::task_operations::RestrictOperationsBase
 RestrictOperationsBase ()
 
 ~RestrictOperationsBase () override
 
- Public Member Functions inherited from core::pack::task::operation::TaskOperation
 ~TaskOperation () override
 
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &) const
 Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...
 

Static Public Member Functions

static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 
static std::string keyname ()
 

Private Attributes

std::string unparsed_residues_
 
utility::vector1< core::Sizeresidues_
 
std::string reference_pdb_id_
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::task_operations::RestrictOperationsBase
void run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
 this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...
 

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::task_operations::RestrictResiduesToRepackingOperation::RestrictResiduesToRepackingOperation ( )

References reference_pdb_id_, and residues_.

protocols::task_operations::RestrictResiduesToRepackingOperation::RestrictResiduesToRepackingOperation ( utility::vector1< core::Size > const &  residues)
protocols::task_operations::RestrictResiduesToRepackingOperation::~RestrictResiduesToRepackingOperation ( )
overridedefault

Member Function Documentation

void protocols::task_operations::RestrictResiduesToRepackingOperation::apply ( core::pose::Pose const &  ,
core::pack::task::PackerTask  
) const
overridevirtual
core::pack::task::operation::TaskOperationOP protocols::task_operations::RestrictResiduesToRepackingOperation::clone ( ) const
overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::task_operations::RestrictOperationsBase.

utility::vector1< core::Size > protocols::task_operations::RestrictResiduesToRepackingOperation::get_residues ( ) const

References residues_.

static std::string protocols::task_operations::RestrictResiduesToRepackingOperation::keyname ( )
inlinestatic
void protocols::task_operations::RestrictResiduesToRepackingOperation::parse_tag ( TagCOP  tag,
DataMap  
)
overridevirtual
void protocols::task_operations::RestrictResiduesToRepackingOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
std::string protocols::task_operations::RestrictResiduesToRepackingOperation::reference_pdb_id ( ) const
inline

References reference_pdb_id_.

void protocols::task_operations::RestrictResiduesToRepackingOperation::reference_pdb_id ( std::string const &  s)
inline

References reference_pdb_id_.

void protocols::task_operations::RestrictResiduesToRepackingOperation::set_residues ( utility::vector1< core::Size residues_vec)

References residues_.

Member Data Documentation

std::string protocols::task_operations::RestrictResiduesToRepackingOperation::reference_pdb_id_
private
utility::vector1< core::Size > protocols::task_operations::RestrictResiduesToRepackingOperation::residues_
private
std::string protocols::task_operations::RestrictResiduesToRepackingOperation::unparsed_residues_
private

Referenced by parse_tag().


The documentation for this class was generated from the following files: