protocols::task_operations::RestrictResiduesToRepackingOperation Class Reference

#include <RestrictResiduesToRepackingOperation.hh>

Inheritance diagram for protocols::task_operations::RestrictResiduesToRepackingOperation:

Public Types
typedef RestrictOperationsBase	parent
Public Types inherited from protocols::task_operations::RestrictOperationsBase
typedef core::pack::task::operation::TaskOperation	TaskOperation
typedef core::pack::task::operation::TaskOperationOP	TaskOperationOP
typedef TaskOperation	parent
Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap
typedef pose::Pose	Pose

Public Member Functions
	RestrictResiduesToRepackingOperation ()
	RestrictResiduesToRepackingOperation (utility::vector1< core::Size > const &residues)
utility::vector1< core::Size >	get_residues () const
void	set_residues (utility::vector1< core::Size > residues_vec)
	~RestrictResiduesToRepackingOperation () override
TaskOperationOP	clone () const override
	Create another task operation of the type matching the most-derived version of the class. More...
void	apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
	Change a packer task in some way. The input pose is the one to which the input task will be later applied. More...
void	parse_tag (TagCOP, DataMap &) override
	Used to parse an xml-like tag to load parameters and properties. More...
std::string	reference_pdb_id () const
void	reference_pdb_id (std::string const &s)
Public Member Functions inherited from protocols::task_operations::RestrictOperationsBase
	RestrictOperationsBase ()
	~RestrictOperationsBase () override
Public Member Functions inherited from core::pack::task::operation::TaskOperation
	~TaskOperation () override
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
static std::string	keyname ()

Private Attributes
std::string	unparsed_residues_
utility::vector1< core::Size >	residues_
std::string	reference_pdb_id_

Additional Inherited Members
Protected Member Functions inherited from protocols::task_operations::RestrictOperationsBase
void	run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
	this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...

Detailed Description

this class is a TaskOperation to prevent repacking of residues not near an interface.

Member Typedef Documentation

parent

typedef RestrictOperationsBase protocols::task_operations::RestrictResiduesToRepackingOperation::parent

Constructor & Destructor Documentation

RestrictResiduesToRepackingOperation() [1/2]

protocols::task_operations::RestrictResiduesToRepackingOperation::RestrictResiduesToRepackingOperation

(

)

References reference_pdb_id_, and residues_.

RestrictResiduesToRepackingOperation() [2/2]

protocols::task_operations::RestrictResiduesToRepackingOperation::RestrictResiduesToRepackingOperation

(

utility::vector1< core::Size > const &

residues

)

~RestrictResiduesToRepackingOperation()

protocols::task_operations::RestrictResiduesToRepackingOperation::~RestrictResiduesToRepackingOperation ( )

overridedefault

Member Function Documentation

apply()

void protocols::task_operations::RestrictResiduesToRepackingOperation::apply ( core::pose::Pose const &  , core::pack::task::PackerTask &    ) const

overridevirtual

Change a packer task in some way. The input pose is the one to which the input task will be later applied.

Implements protocols::task_operations::RestrictOperationsBase.

References core::pack::task::operation::RestrictResidueToRepacking::apply(), core::pack::task::operation::RestrictResidueToRepacking::include_residue(), residues_, and protocols::task_operations::TR().

clone()

core::pack::task::operation::TaskOperationOP protocols::task_operations::RestrictResiduesToRepackingOperation::clone ( ) const

overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::task_operations::RestrictOperationsBase.

get_residues()

utility::vector1< core::Size > protocols::task_operations::RestrictResiduesToRepackingOperation::get_residues

(

)

const

References residues_.

keyname()

static std::string protocols::task_operations::RestrictResiduesToRepackingOperation::keyname ( )

inlinestatic

Referenced by protocols::task_operations::RestrictResiduesToRepackingOperationCreator::keyname(), and provide_xml_schema().

parse_tag()

void protocols::task_operations::RestrictResiduesToRepackingOperation::parse_tag ( TagCOP  tag, DataMap &    )

overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References core::pose::parse_resnum(), core::import_pose::PDB_file, core::import_pose::pose_from_file(), reference_pdb_id_, residues_, protocols::task_operations::TR(), and unparsed_residues_.

provide_xml_schema()

void protocols::task_operations::RestrictResiduesToRepackingOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References keyname(), and core::pack::task::operation::task_op_schema_w_attributes().

Referenced by protocols::task_operations::RestrictResiduesToRepackingOperationCreator::provide_xml_schema().

reference_pdb_id() [1/2]

std::string protocols::task_operations::RestrictResiduesToRepackingOperation::reference_pdb_id ( ) const

inline

References reference_pdb_id_.

reference_pdb_id() [2/2]

void protocols::task_operations::RestrictResiduesToRepackingOperation::reference_pdb_id ( std::string const &  s )

inline

References reference_pdb_id_.

set_residues()

void protocols::task_operations::RestrictResiduesToRepackingOperation::set_residues

(

utility::vector1< core::Size >

residues_vec

)

References residues_.

Member Data Documentation

reference_pdb_id_

std::string protocols::task_operations::RestrictResiduesToRepackingOperation::reference_pdb_id_

private

Referenced by parse_tag(), reference_pdb_id(), and RestrictResiduesToRepackingOperation().

residues_

utility::vector1< core::Size > protocols::task_operations::RestrictResiduesToRepackingOperation::residues_

private

Referenced by apply(), get_residues(), parse_tag(), RestrictResiduesToRepackingOperation(), and set_residues().

unparsed_residues_

std::string protocols::task_operations::RestrictResiduesToRepackingOperation::unparsed_residues_

private

Referenced by parse_tag().

---

The documentation for this class was generated from the following files:

• src/protocols/task_operations/RestrictResiduesToRepackingOperation.hh
• src/protocols/task_operations/RestrictResiduesToRepackingOperation.cc