Rosetta  2021.16
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water_rotamer_building_functions.cc File Reference
#include <core/pack/rotamer_set/water_rotamer_building_functions.hh>
#include <core/pack/rotamer_set/RotamerCouplings.hh>
#include <core/pack/rotamer_set/RotamerSet.hh>
#include <core/pack/rotamer_set/RotamerSets.hh>
#include <core/pack/rotamer_set/WaterAnchorInfo.hh>
#include <core/pack/rotamer_set/WaterPackingInfo.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/RotamerSampleOptions.hh>
#include <core/pack/dunbrack/ChiSet.hh>
#include <core/pack/dunbrack/DunbrackRotamer.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/types.hh>
#include <core/conformation/Atom.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueMatcher.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/kinematics/Stub.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/scoring/hbonds/HBEvalTuple.hh>
#include <core/scoring/hbonds/HBondDatabase.hh>
#include <core/scoring/hbonds/HBondOptions.hh>
#include <core/scoring/hbonds/hbonds_geom.hh>
#include <core/scoring/func/Func.hh>
#include <core/scoring/func/HarmonicFunc.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <core/scoring/constraints/AngleConstraint.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/ScoreFunction.hh>
#include <utility/graph/Graph.hh>
#include <core/pose/Pose.hh>
#include <core/pose/datacache/CacheableDataType.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <basic/Tracer.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <basic/database/open.hh>
#include <numeric/random/random.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/xyzTransform.hh>
#include <numeric/constants.hh>
#include <numeric/UniformRotationSampler.hh>
#include <numeric/AxisRotationSampler.hh>
#include <utility/io/izstream.hh>
#include <utility/vector1.hh>
#include <ObjexxFCL/format.hh>
#include <ObjexxFCL/FArray3D.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/corrections.OptionKeys.gen.hh>
#include <string>
#include <iostream>
#include <fstream>

Namespaces

 core
 A class for reading in the atom type properties.
 
 core::pack
 
 core::pack::rotamer_set
 

Functions

static basic::Tracer core::pack::rotamer_set::TR ("core.pack.rotamer_set.water_rotamer_building_functions")
 
core::PackerEnergy core::pack::rotamer_set::bump_check (core::conformation::ResidueCOP rotamer, core::Size resid, scoring::ScoreFunction const &sf, pose::Pose const &pose, task::PackerTask const &task, utility::graph::GraphCOP packer_neighbor_graph)
 
void core::pack::rotamer_set::build_rotated_water_rotamers (Size const seqpos, pack::task::PackerTask const &task, pose::Pose const &pose, scoring::ScoreFunction const &scorefxn, utility::graph::GraphCOP packer_neighbor_graph, utility::vector1< conformation::ResidueOP > &new_rotamers, bool incl_vrt)