util.hh File Reference

#include <core/pose/Pose.fwd.hh>
#include <core/id/AtomID_Map.fwd.hh>
#include <core/id/AtomID.fwd.hh>
#include <core/io/silent/SilentFileData.hh>
#include <core/types.hh>
#include <utility/vector1.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::stepwise
	protocols::stepwise::legacy
	protocols::stepwise::legacy::modeler
	protocols::stepwise::legacy::modeler::protein

Functions
utility::vector1< core::Size > const	protocols::stepwise::legacy::modeler::protein::convert_to_working_res (utility::vector1< core::Size > const &res_vector, utility::vector1< core::Size > const &working_res)
void	protocols::stepwise::legacy::modeler::protein::output_pose_list (utility::vector1< core::pose::PoseOP > pose_list, core::pose::PoseCOP native_pose, std::string const &silent_file, utility::vector1< core::Size > const &working_calc_rms_res, bool const overwrite)
void	protocols::stepwise::legacy::modeler::protein::output_silent_struct (core::pose::Pose const &pose, core::pose::PoseCOP const &native_pose_op, std::string const &silent_file, std::string const &tag, core::io::silent::SilentFileDataOP sfd_in)
void	protocols::stepwise::legacy::modeler::protein::output_silent_struct (core::pose::Pose const &pose, core::pose::PoseCOP const &native_pose_op, std::string const &silent_file, std::string const &tag, core::io::silent::SilentFileDataOP sfd_in, utility::vector1< core::Size > const &calc_rms_res)
Real	protocols::stepwise::legacy::modeler::protein::get_pretend_psi_explicit (core::pose::Pose const &pose, core::Size const &res)
Real	protocols::stepwise::legacy::modeler::protein::get_pretend_phi_explicit (core::pose::Pose const &pose, core::Size const &res)
bool	protocols::stepwise::legacy::modeler::protein::is_close_chain_break (core::pose::Pose const &pose)