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protocols::stepwise::sampler::rna Namespace Reference

Classes

class  RNA_ChiStepWiseSampler
 
class  RNA_KIC_Sampler
 
class  RNA_KinematicCloser
 The RNA de novo structure modeling protocol. More...
 
class  RNA_NucleosideStepWiseSampler
 
class  RNA_SugarStepWiseSampler
 
class  RNA_SuiteStepWiseSampler
 

Typedefs

typedef utility::pointer::shared_ptr< RNA_ChiStepWiseSamplerRNA_ChiStepWiseSamplerOP
 
typedef utility::pointer::shared_ptr< RNA_KIC_SamplerRNA_KIC_SamplerOP
 
typedef utility::pointer::shared_ptr< RNA_KinematicCloserRNA_KinematicCloserOP
 
typedef utility::pointer::shared_ptr< RNA_NucleosideStepWiseSamplerRNA_NucleosideStepWiseSamplerOP
 
typedef utility::pointer::shared_ptr< RNA_SugarStepWiseSamplerRNA_SugarStepWiseSamplerOP
 
typedef utility::pointer::shared_ptr< RNA_SuiteStepWiseSamplerRNA_SuiteStepWiseSamplerOP
 

Functions

static basic::Tracer TR ("protocols.sampler.rna.RNA_SugarStepWiseSampler")
 
sampler::StepWiseSamplerOP setup_sampler (pose::Pose const &pose, modeler::options::StepWiseModelerOptionsCOP options, working_parameters::StepWiseWorkingParametersCOP working_parameters, bool const build_pose_from_scratch, bool const kic_modeler, bool const close_chain)
 
bool modeler_sugar_at_five_prime (pose::Pose const &pose, core::Size const moving_suite)
 
bool modeler_sugar_at_three_prime (pose::Pose const &pose, core::Size const moving_suite)
 

Typedef Documentation

◆ RNA_ChiStepWiseSamplerOP

◆ RNA_KIC_SamplerOP

◆ RNA_KinematicCloserOP

◆ RNA_NucleosideStepWiseSamplerOP

◆ RNA_SugarStepWiseSamplerOP

◆ RNA_SuiteStepWiseSamplerOP

Function Documentation

◆ modeler_sugar_at_five_prime()

bool protocols::stepwise::sampler::rna::modeler_sugar_at_five_prime ( pose::Pose const &  pose,
core::Size const  moving_suite 
)

◆ modeler_sugar_at_three_prime()

bool protocols::stepwise::sampler::rna::modeler_sugar_at_three_prime ( pose::Pose const &  pose,
core::Size const  moving_suite 
)

◆ setup_sampler()

sampler::StepWiseSamplerOP protocols::stepwise::sampler::rna::setup_sampler ( pose::Pose const &  pose,
modeler::options::StepWiseModelerOptionsCOP  options,
working_parameters::StepWiseWorkingParametersCOP  working_parameters,
bool const  build_pose_from_scratch,
bool const  kic_modeler,
bool const  close_chain 
)

◆ TR()

static basic::Tracer protocols::stepwise::sampler::rna::TR ( "protocols.sampler.rna.RNA_SugarStepWiseSampler"  )
static