Rosetta  2020.37
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Public Member Functions | Static Public Member Functions | Private Attributes | List of all members
protocols::protein_interface_design::filters::ClashWithTargetFilter Class Reference

#include <ClashWithTargetFilter.hh>

Inheritance diagram for protocols::protein_interface_design::filters::ClashWithTargetFilter:
Inheritance graph
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Public Member Functions

 ClashWithTargetFilter ()
 
bool apply (core::pose::Pose const &pose) const override
 Returns true if the given pose passes the filter, false otherwise. More...
 
protocols::filters::FilterOP clone () const override
 
protocols::filters::FilterOP fresh_instance () const override
 
void report (std::ostream &out, core::pose::Pose const &pose) const override
 
core::Real report_sm (core::pose::Pose const &pose) const override
 used to report filter internals through a score or silent file More...
 
core::Size compute (core::pose::Pose const &pose) const
 
 ~ClashWithTargetFilter () override
 
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
 
std::string name () const override
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
 ~Filter () override
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Attributes

std::string align_to_pdbname_
 
std::string context_pdbname_
 
core::Size clash_score_cutoff_
 
std::string clash_residues_
 
core::Size ref_start_
 
core::Size ref_end_
 
core::Size pose_start_
 
core::Size pose_end_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::ClashWithTargetFilter::ClashWithTargetFilter ( )
protocols::protein_interface_design::filters::ClashWithTargetFilter::~ClashWithTargetFilter ( )
overridedefault

Member Function Documentation

bool protocols::protein_interface_design::filters::ClashWithTargetFilter::apply ( core::pose::Pose const &  pose) const
overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References clash_score_cutoff_, compute(), and protocols::protein_interface_design::filters::TR().

std::string protocols::protein_interface_design::filters::ClashWithTargetFilter::class_name ( )
static
protocols::filters::FilterOP protocols::protein_interface_design::filters::ClashWithTargetFilter::clone ( ) const
overridevirtual
core::Size protocols::protein_interface_design::filters::ClashWithTargetFilter::compute ( core::pose::Pose const &  pose) const
protocols::filters::FilterOP protocols::protein_interface_design::filters::ClashWithTargetFilter::fresh_instance ( ) const
inlineoverridevirtual
std::string protocols::protein_interface_design::filters::ClashWithTargetFilter::name ( ) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::protein_interface_design::filters::ClashWithTargetFilter::parse_my_tag ( utility::tag::TagCOP  ,
basic::datacache::DataMap &   
)
overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References align_to_pdbname_, clash_residues_, clash_score_cutoff_, context_pdbname_, pose_end_, pose_start_, ref_end_, ref_start_, and protocols::protein_interface_design::filters::TR().

void protocols::protein_interface_design::filters::ClashWithTargetFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
void protocols::protein_interface_design::filters::ClashWithTargetFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const
overridevirtual

Reimplemented from protocols::filters::Filter.

References clash_score_cutoff_, and compute().

core::Real protocols::protein_interface_design::filters::ClashWithTargetFilter::report_sm ( core::pose::Pose const &  ) const
overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

std::string protocols::protein_interface_design::filters::ClashWithTargetFilter::align_to_pdbname_
private

Referenced by compute(), and parse_my_tag().

std::string protocols::protein_interface_design::filters::ClashWithTargetFilter::clash_residues_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::ClashWithTargetFilter::clash_score_cutoff_
private

Referenced by apply(), compute(), parse_my_tag(), and report().

std::string protocols::protein_interface_design::filters::ClashWithTargetFilter::context_pdbname_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::ClashWithTargetFilter::pose_end_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::ClashWithTargetFilter::pose_start_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::ClashWithTargetFilter::ref_end_
private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::ClashWithTargetFilter::ref_start_
private

Referenced by compute(), and parse_my_tag().


The documentation for this class was generated from the following files: