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cif_writer.cc File Reference
#include <core/io/mmcif/cif_writer.hh>
#include <core/io/pdb/pdb_reader.hh>
#include <core/io/rcsb/ExperimentalTechnique.hh>
#include <core/io/StructFileRepOptions.hh>
#include <core/io/pose_to_sfr/PoseToStructFileRepConverter.hh>
#include <core/pose/Pose.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/Conformation.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/Patch.hh>
#include <core/chemical/ResidueConnection.hh>
#include <utility/io/ozstream.hh>
#include <utility/string_util.hh>
#include <utility/io/izstream.hh>
#include <numeric/random/random.hh>
#include <core/pose/PDBInfo.hh>
#include <core/io/pdb/Field.hh>
#include <core/io/HeaderInformation.hh>
#include <core/io/StructFileRep.hh>
#include <core/chemical/carbohydrates/CarbohydrateInfoManager.hh>
#include <core/io/Remarks.hh>
#include <core/types.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/chemical.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/options/keys/in.OptionKeys.gen.hh>
#include <basic/options/keys/mp.OptionKeys.gen.hh>
#include <basic/options/keys/inout.OptionKeys.gen.hh>
#include <basic/options/keys/out.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <numeric/xyzVector.hh>
#include <utility/vector1.hh>
#include <utility/tools/make_map.hh>
#include <ObjexxFCL/string.functions.hh>
#include <ObjexxFCL/format.hh>
#include <cifparse/CifFile.h>
#include <cstdlib>
#include <cstdio>
#include <algorithm>

Namespaces

 core
 A class for reading in the atom type properties.
 
 core::io
 
 core::io::mmcif
 

Typedefs

using CifFileOP = utility::pointer::shared_ptr< CifFile >
 

Functions

static basic::Tracer TR ("core.io.mmcif.cif_writer.hh")
 
bool core::io::mmcif::dump_cif (core::pose::Pose const &pose, std::string const &file_name, StructFileRepOptionsCOP options)
 Dump an mmCIF from a pose to a file. Return success or failure. More...
 
StructFileRepOP core::io::mmcif::dump_cif (core::pose::Pose const &pose, std::ostream &out, StructFileRepOptionsCOP options)
 Dump an mmCIF from a pose to an ostream. More...
 
std::string core::io::mmcif::dump_cif (core::pose::Pose const &pose)
 Return an mmCIF-format string from a pose. More...
 
StructFileRepOP core::io::mmcif::dump_cif (core::pose::Pose const &pose, std::string const &jd2_job_data, std::ostream &out)
 Dump an mmCIF from a pose, optionally extracting extra info. More...
 
bool core::io::mmcif::dump_cif (std::string const &file_name, StructFileRepOP sfr, StructFileRepOptions const &options)
 Main dump_cif function. Create the sfr from pose using the PoseToStructFileRepConverter class. Return success or failure. More...
 
std::string core::io::mmcif::dump_cif (StructFileRepOP sfr, StructFileRepOptions const &options)
 Main dump_cif function. Return a string with contents of a CIF file, extracted from a Pose to a StructFileRep via PoseToStructFileRepConverter. More...
 
void core::io::mmcif::dump_cif (std::ostream &out, StructFileRepOP sfr, StructFileRepOptions const &options)
 Main dump_cif function. Create the sfr from pose using the PoseToStructFileRepConverter class. More...
 

Typedef Documentation

using CifFileOP = utility::pointer::shared_ptr<CifFile>

Function Documentation

static basic::Tracer TR ( "core.io.mmcif.cif_writer.hh"  )
static