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protocols::features::RuntimeFeatures Class Reference

#include <RuntimeFeatures.hh>

Inheritance diagram for protocols::features::RuntimeFeatures:
Inheritance graph
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Public Member Functions

 RuntimeFeatures ()
 Default constructor. More...
 
 ~RuntimeFeatures () override
 Default destructor. More...
 
utility::vector1< std::string > features_reporter_dependencies () const override
 
void write_schema_to_db (utility::sql_database::sessionOP db_session) const override
 Define the schema and write it to the database. This is most easily achieved using the schema_generator. Once everything has converted to the schema generator this should be made a pure virtual. More...
 
core::Size report_features (core::pose::Pose const &pose, utility::vector1< bool > const &relevant_residues, StructureID struct_id, utility::sql_database::sessionOP db_session) override
 Report runtime information for the current job. More...
 
std::string type_name () const override
 
- Public Member Functions inherited from protocols::features::FeaturesReporter
 FeaturesReporter ()
 
 ~FeaturesReporter () override
 Automatically generated virtual destructor for class deriving directly from VirtualBase. More...
 
virtual std::string schema () const
 return sql statements that sets up the appropriate tables to contain the features. This should be removed once everything has been moved to the schema generator More...
 
core::Size report_features (core::pose::Pose const &, StructureID, utility::sql_database::sessionOP)
 collect all the feature data for the pose. More...
 
virtual void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &)
 
virtual void load_into_pose (utility::sql_database::sessionOP, StructureID, core::pose::Pose &)
 
virtual void delete_record (StructureID, utility::sql_database::sessionOP)
 
void set_relevant_residues_mode (RelevantResiduesMode::T setting)
 
RelevantResiduesMode::T get_relevant_residues_mode () const
 
bool check_relevant_residues (utility::vector1< bool > const &relevant_residues, core::Size res1) const
 
bool check_relevant_residues (utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const
 
bool check_relevant_residues_range (utility::vector1< bool > const &relevant_residues, core::Size res1, core::Size res2) const
 
bool check_relevant_residues (utility::vector1< bool > const &relevant_residues, utility::vector1< core::Size > const &residues) const
 

Static Public Member Functions

static std::string class_name ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::features::FeaturesReporter
std::string find_tag (core::pose::Pose const &pose) const
 
void delete_records_from_table (std::string const &table_name, StructureID struct_id, utility::sql_database::sessionOP db_session)
 a helper function for deleting data associated with a given structure from feature database WARNING table_name must be sanitized! More...
 
- Protected Attributes inherited from protocols::features::FeaturesReporter
RelevantResiduesMode::T relevant_residues_mode_
 

Constructor & Destructor Documentation

protocols::features::RuntimeFeatures::RuntimeFeatures ( )
default

Default constructor.

protocols::features::RuntimeFeatures::~RuntimeFeatures ( )
overridedefault

Default destructor.

Member Function Documentation

std::string protocols::features::RuntimeFeatures::class_name ( )
static
vector1< string > protocols::features::RuntimeFeatures::features_reporter_dependencies ( ) const
overridevirtual

The runtime features links to a structure ID, so the StructureFeatures reporter must also be present.

Reimplemented from protocols::features::FeaturesReporter.

void protocols::features::RuntimeFeatures::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
Size protocols::features::RuntimeFeatures::report_features ( core::pose::Pose const &  pose,
utility::vector1< bool > const &  relevant_residues,
StructureID  struct_id,
utility::sql_database::sessionOP  db_session 
)
overridevirtual
std::string protocols::features::RuntimeFeatures::type_name ( ) const
overridevirtual
void protocols::features::RuntimeFeatures::write_schema_to_db ( utility::sql_database::sessionOP  db_session) const
overridevirtual

Define the schema and write it to the database. This is most easily achieved using the schema_generator. Once everything has converted to the schema generator this should be made a pure virtual.

Implements protocols::features::FeaturesReporter.


The documentation for this class was generated from the following files: