core::scoring::motif::Xfrag Class Reference

#include <xfrags.hh>

Public Member Functions
	Xfrag ()
	Xfrag (Real6 _rt, Size _position, uint8_t _size, char _sscomp, Real _bfac, Real _burial)
Real6	rt6 () const
Size	position () const
Size	size () const
char	sscomp () const
Real	bfac () const
Real	burial () const
Real	ex1 () const
Real	ex2 () const
Real	ex3 () const
Real	ex4 () const
void	rt6 (Real6 const &_rt6)
void	position (Size _position)
void	size (Size _size)
void	sscomp (char _sscomp)
void	bfac (Real _bfac)
void	burial (Real _burial)
void	ex1 (Real _ex1)
void	ex2 (Real _ex2)
void	ex3 (Real _ex3)
void	ex4 (Real _ex4)
void	insert (core::pose::Pose &pose, utility::vector1< Xfres > const &xfres, Size lowres, Size highres) const

Private Attributes
utility::fixedsizearray1< uint16_t, 6 >	rt6_
uint32_t	position_
char	sscomp_
uint8_t	size_
uint8_t	bfac_
uint8_t	burial_
uint8_t	ex1_
uint8_t	ex2_
uint8_t	ex3_
uint8_t	ex4_

Constructor & Destructor Documentation

Xfrag() [1/2]

core::scoring::motif::Xfrag::Xfrag ( )

inline

Xfrag() [2/2]

core::scoring::motif::Xfrag::Xfrag	(	Real6	_rt,
		Size	_position,
		uint8_t	_size,
		char	_sscomp,
		Real	_bfac,
		Real	_burial
	)

References core::scoring::burial.

Member Function Documentation

bfac() [1/2]

Real core::scoring::motif::Xfrag::bfac

(

)

const

References core::scoring::motif::uint8_to_real().

Referenced by core::scoring::motif::operator<<(), and core::scoring::motif::operator>>().

bfac() [2/2]

void core::scoring::motif::Xfrag::bfac

(

Real

_bfac

)

References core::scoring::motif::real_to_uint8().

burial() [1/2]

Real core::scoring::motif::Xfrag::burial

(

)

const

References core::scoring::motif::uint8_to_real().

Referenced by core::scoring::motif::operator<<(), and core::scoring::motif::operator>>().

burial() [2/2]

void core::scoring::motif::Xfrag::burial

(

Real

_burial

)

References core::scoring::motif::real_to_uint8().

ex1() [1/2]

Real core::scoring::motif::Xfrag::ex1

(

)

const

References core::scoring::motif::uint8_to_real().

Referenced by core::scoring::motif::operator<<(), and core::scoring::motif::operator>>().

ex1() [2/2]

void core::scoring::motif::Xfrag::ex1

(

Real

_ex1

)

References core::scoring::motif::real_to_uint8().

ex2() [1/2]

Real core::scoring::motif::Xfrag::ex2

(

)

const

References core::scoring::motif::uint8_to_real().

Referenced by core::scoring::motif::operator<<(), and core::scoring::motif::operator>>().

ex2() [2/2]

void core::scoring::motif::Xfrag::ex2

(

Real

_ex2

)

References core::scoring::motif::real_to_uint8().

ex3() [1/2]

Real core::scoring::motif::Xfrag::ex3

(

)

const

References core::scoring::motif::uint8_to_real().

Referenced by core::scoring::motif::operator<<(), and core::scoring::motif::operator>>().

ex3() [2/2]

void core::scoring::motif::Xfrag::ex3

(

Real

_ex3

)

References core::scoring::motif::real_to_uint8().

ex4() [1/2]

Real core::scoring::motif::Xfrag::ex4

(

)

const

References core::scoring::motif::uint8_to_real().

Referenced by core::scoring::motif::operator<<(), and core::scoring::motif::operator>>().

ex4() [2/2]

void core::scoring::motif::Xfrag::ex4

(

Real

_ex4

)

References core::scoring::motif::real_to_uint8().

insert()

void core::scoring::motif::Xfrag::insert	(	core::pose::Pose &	pose,
		utility::vector1< Xfres > const &	xfres,
		Size	lowres,
		Size	highres
	)		const

References core::pose::Pose::append_polymer_residue_after_seqpos(), core::conformation::ResidueFactory::create_residue(), core::kinematics::FoldTree::cutpoint(), core::pose::Pose::delete_polymer_residue(), core::kinematics::FoldTree::downstream_jump_residue(), core::pose::Pose::fold_tree(), core::pose::get_restype_for_pose(), core::kinematics::FoldTree::is_jump_point(), core::kinematics::FoldTree::nres(), core::pose::Pose::num_jump(), core::kinematics::FoldTree::reorder(), core::pose::Pose::set_omega(), core::pose::Pose::set_phi(), core::pose::Pose::set_psi(), core::kinematics::FoldTree::slide_cutpoint(), core::kinematics::FoldTree::slide_jump(), and core::kinematics::FoldTree::upstream_jump_residue().

position() [1/2]

Size core::scoring::motif::Xfrag::position

(

)

const

Referenced by core::scoring::motif::operator<<(), and core::scoring::motif::operator>>().

position() [2/2]

void core::scoring::motif::Xfrag::position

(

Size

_position

)

rt6() [1/2]

Real6 core::scoring::motif::Xfrag::rt6

(

)

const

References core::scoring::motif::MOTIF_HASH_CART_SIZE, and core::scoring::motif::uint16_to_real().

Referenced by core::scoring::motif::operator<<().

rt6() [2/2]

void core::scoring::motif::Xfrag::rt6

(

Real6 const &

_rt6

)

References core::scoring::motif::MOTIF_HASH_CART_SIZE, and core::scoring::motif::real_to_uint16().

size() [1/2]

Size core::scoring::motif::Xfrag::size

(

)

const

Referenced by core::scoring::motif::operator<<(), and core::scoring::motif::operator>>().

size() [2/2]

void core::scoring::motif::Xfrag::size

(

Size

_size

)

sscomp() [1/2]

char core::scoring::motif::Xfrag::sscomp

(

)

const

Referenced by core::scoring::motif::operator<<(), and core::scoring::motif::operator>>().

sscomp() [2/2]

void core::scoring::motif::Xfrag::sscomp

(

char

_sscomp

)

Member Data Documentation

bfac_

uint8_t core::scoring::motif::Xfrag::bfac_

private

burial_

uint8_t core::scoring::motif::Xfrag::burial_

private

ex1_

uint8_t core::scoring::motif::Xfrag::ex1_

private

ex2_

uint8_t core::scoring::motif::Xfrag::ex2_

private

ex3_

uint8_t core::scoring::motif::Xfrag::ex3_

private

ex4_

uint8_t core::scoring::motif::Xfrag::ex4_

private

position_

uint32_t core::scoring::motif::Xfrag::position_

private

rt6_

utility::fixedsizearray1<uint16_t,6> core::scoring::motif::Xfrag::rt6_

private

size_

uint8_t core::scoring::motif::Xfrag::size_

private

sscomp_

char core::scoring::motif::Xfrag::sscomp_

private

---

The documentation for this class was generated from the following files:

• src/core/scoring/motif/xfrags.hh
• src/core/scoring/motif/xfrags.cc