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Public Types | Public Member Functions | Static Public Member Functions | Private Attributes | List of all members
protocols::splice::FindEndpointsOperation Class Reference

#include <FindEndpointsOperation.hh>

Inheritance diagram for protocols::splice::FindEndpointsOperation:
Inheritance graph
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Public Types

typedef RestrictOperationsBase parent
 
- Public Types inherited from protocols::task_operations::RestrictOperationsBase
typedef
core::pack::task::operation::TaskOperation 
TaskOperation
 
typedef
core::pack::task::operation::TaskOperationOP 
TaskOperationOP
 
typedef TaskOperation parent
 
- Public Types inherited from core::pack::task::operation::TaskOperation
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 
typedef pose::Pose Pose
 

Public Member Functions

 FindEndpointsOperation ()
 
 ~FindEndpointsOperation () override
 
TaskOperationOP clone () const override
 Create another task operation of the type matching the most-derived version of the class. More...
 
void apply (core::pose::Pose const &, core::pack::task::PackerTask &) const override
 restricts to repacking all residues outside of design_shell_ around each residue More...
 
void parse_tag (TagCOP, DataMap &) override
 Used to parse an xml-like tag to load parameters and properties. More...
 
core::Size Cterm_offset () const
 
void Cterm_offset (core::Size const c)
 
core::Size Nterm_offset () const
 
void Nterm_offset (core::Size const n)
 
bool even () const
 
void even (bool const b)
 
bool odd () const
 
void odd (bool const b)
 
core::Real distance_cutoff () const
 
void distance_cutoff (core::Real const d)
 
core::Size neighbors () const
 
void neighbors (core::Size const s)
 
bool point_inside () const
 
void point_inside (bool const b)
 
core::Size sequence_separation () const
 
void sequence_separation (core::Size const s)
 
- Public Member Functions inherited from protocols::task_operations::RestrictOperationsBase
 RestrictOperationsBase ()
 
 ~RestrictOperationsBase () override
 
- Public Member Functions inherited from core::pack::task::operation::TaskOperation
 ~TaskOperation () override
 
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &) const
 Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...
 

Static Public Member Functions

static std::string keyname ()
 
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)
 

Private Attributes

core::Size Cterm_offset_
 
core::Size Nterm_offset_
 
bool even_
 
bool odd_
 
core::Real distance_cutoff_
 
core::Size neighbors_
 
bool point_inside_
 
core::Size sequence_separation_
 

Additional Inherited Members

- Protected Member Functions inherited from protocols::task_operations::RestrictOperationsBase
void run_calculator (core::pose::Pose const &pose, std::string const &calculator, std::string const &calculation, utility::vector1_bool &residues) const
 this is the only real function - it takes a calculator name and calculation, and a PackerTask-compatible vector, and flips booleans in the vector according to the calculator More...
 

Detailed Description

Find the endpoints on a beta barrel

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::splice::FindEndpointsOperation::FindEndpointsOperation ( )
protocols::splice::FindEndpointsOperation::~FindEndpointsOperation ( )
overridedefault

Member Function Documentation

void protocols::splice::FindEndpointsOperation::apply ( core::pose::Pose const &  pose,
core::pack::task::PackerTask task 
) const
overridevirtual
core::pack::task::operation::TaskOperationOP protocols::splice::FindEndpointsOperation::clone ( ) const
overridevirtual

Create another task operation of the type matching the most-derived version of the class.

Implements protocols::task_operations::RestrictOperationsBase.

core::Size protocols::splice::FindEndpointsOperation::Cterm_offset ( ) const
inline

References Cterm_offset_.

Referenced by parse_tag().

void protocols::splice::FindEndpointsOperation::Cterm_offset ( core::Size const  c)
inline
core::Real protocols::splice::FindEndpointsOperation::distance_cutoff ( ) const
inline

References distance_cutoff_.

Referenced by apply(), and parse_tag().

void protocols::splice::FindEndpointsOperation::distance_cutoff ( core::Real const  d)
inline

References distance_cutoff_.

bool protocols::splice::FindEndpointsOperation::even ( ) const
inline

References even_.

Referenced by apply(), and parse_tag().

void protocols::splice::FindEndpointsOperation::even ( bool const  b)
inline
static std::string protocols::splice::FindEndpointsOperation::keyname ( )
inlinestatic
core::Size protocols::splice::FindEndpointsOperation::neighbors ( ) const
inline

References neighbors_.

Referenced by apply(), and parse_tag().

void protocols::splice::FindEndpointsOperation::neighbors ( core::Size const  s)
inline

References neighbors_.

core::Size protocols::splice::FindEndpointsOperation::Nterm_offset ( ) const
inline

References Nterm_offset_.

Referenced by parse_tag().

void protocols::splice::FindEndpointsOperation::Nterm_offset ( core::Size const  n)
inline

References Nterm_offset_.

bool protocols::splice::FindEndpointsOperation::odd ( ) const
inline

References odd_.

Referenced by apply(), and parse_tag().

void protocols::splice::FindEndpointsOperation::odd ( bool const  b)
inline
void protocols::splice::FindEndpointsOperation::parse_tag ( TagCOP  tag,
DataMap  
)
overridevirtual

Used to parse an xml-like tag to load parameters and properties.

Reimplemented from core::pack::task::operation::TaskOperation.

References Cterm_offset(), distance_cutoff(), even(), neighbors(), Nterm_offset(), odd(), point_inside(), sequence_separation(), and protocols::splice::TR().

bool protocols::splice::FindEndpointsOperation::point_inside ( ) const
inline

References point_inside_.

Referenced by parse_tag().

void protocols::splice::FindEndpointsOperation::point_inside ( bool const  b)
inline
void protocols::splice::FindEndpointsOperation::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
static
core::Size protocols::splice::FindEndpointsOperation::sequence_separation ( ) const
inline

References sequence_separation_.

Referenced by apply(), and parse_tag().

void protocols::splice::FindEndpointsOperation::sequence_separation ( core::Size const  s)
inline

References sequence_separation_.

Member Data Documentation

core::Size protocols::splice::FindEndpointsOperation::Cterm_offset_
private

Referenced by Cterm_offset().

core::Real protocols::splice::FindEndpointsOperation::distance_cutoff_
private

Referenced by distance_cutoff().

bool protocols::splice::FindEndpointsOperation::even_
private

Referenced by even().

core::Size protocols::splice::FindEndpointsOperation::neighbors_
private

Referenced by neighbors().

core::Size protocols::splice::FindEndpointsOperation::Nterm_offset_
private

Referenced by Nterm_offset().

bool protocols::splice::FindEndpointsOperation::odd_
private

Referenced by odd().

bool protocols::splice::FindEndpointsOperation::point_inside_
private

Referenced by point_inside().

core::Size protocols::splice::FindEndpointsOperation::sequence_separation_
private

Referenced by sequence_separation().


The documentation for this class was generated from the following files: