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protocols::chemically_conjugated_docking Namespace Reference


class  UBQ_GTPaseMover
 A mover typically used for binding ubiquitin to a substrate protein. More...
class  UBQ_GTPaseMoverCreator


< UBQ_GTPaseMover
< UBQ_GTPaseMover const > 


utility::vector1< core::Sizeadd_extra_bodies (core::pose::Pose &pose)
 The purpose of this code is to allow for static extra things in the system; for its original incarnations, to allow for a RING domain to occlude its site on E2 and a GAP (+MG +GDP) to occlude ras. More...
void pack_extra_bodies (utility::vector1< core::Size > const &extra_bodies_chains, core::pose::Pose const &pose, std::set< core::Size > &region)
void ubq_ras_distance (core::pose::Pose &pose)
void ubq_ras_rotation_angle (core::pose::Pose const &pose, protocols::jd2::JobOP job_me, core::Size const GTPase_target, bool const ubiquitin)
void create_extra_output (core::pose::Pose &pose, bool const ubiquitin, core::Size const GTPase_target)
std::ostream & operator<< (std::ostream &os, UBQ_GTPaseMover const &mover)
 private methods /// More...

Typedef Documentation

Function Documentation

utility::vector1< core::Size > protocols::chemically_conjugated_docking::add_extra_bodies ( core::pose::Pose pose)
void protocols::chemically_conjugated_docking::create_extra_output ( core::pose::Pose pose,
bool const  ubiquitin,
core::Size const  GTPase_target 

This function is specific to the original system for which this code was written - if you are not trying to duplicate the initial results you should remove it!

References ubq_ras_distance(), and ubq_ras_rotation_angle().

Referenced by protocols::chemically_conjugated_docking::UBQ_GTPaseMover::analyze_and_filter().

std::ostream & protocols::chemically_conjugated_docking::operator<< ( std::ostream &  os,
UBQ_GTPaseMover const &  mover 
void protocols::chemically_conjugated_docking::pack_extra_bodies ( utility::vector1< core::Size > const &  extra_bodies_chains,
core::pose::Pose const &  pose,
std::set< core::Size > &  region 
void protocols::chemically_conjugated_docking::ubq_ras_distance ( core::pose::Pose pose)
void protocols::chemically_conjugated_docking::ubq_ras_rotation_angle ( core::pose::Pose const &  pose,
protocols::jd2::JobOP  job_me,
core::Size const  GTPase_target,
bool const  ubiquitin