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core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > Member List

This is the complete list of members for core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >, including all inherited members.

acknowledge_substitution_surface()core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
add_edge(BackgroundToFirstClassEdge< V, E, G > *edge_ptr)core::pack::interaction_graph::BackgroundNode< V, E, G >
alt_state_total_hASA_core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >private
average_residue_hASA() const core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
average_residue_hASA(chemical::AA residue_type, Size num_nbs) const core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
BackgroundEdgeList typedefcore::pack::interaction_graph::BackgroundNode< V, E, G >
BackgroundEdgeListIter typedefcore::pack::interaction_graph::BackgroundNode< V, E, G >
BackgroundEdgeVector typedefcore::pack::interaction_graph::BackgroundNode< V, E, G >
BackgroundEdgeVectorIter typedefcore::pack::interaction_graph::BackgroundNode< V, E, G >
BackgroundNode(AdditionalBackgroundNodesInteractionGraph< V, E, G > *owner, int node_index)core::pack::interaction_graph::BackgroundNode< V, E, G >
BURIED_RESIDUE_NO_HSASA_CUTOFFcore::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >privatestatic
calculate_amount_total_hydrophobic_ASA()core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
count_dynamic_memory() const overridecore::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >virtual
count_static_memory() const overridecore::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >virtual
curr_state_total_hASA_core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >private
detect_neighborship(SurfaceNode< V, E, G > *node) const core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
drop_edge(BackgroundEdgeListIter edge)core::pack::interaction_graph::BackgroundNode< V, E, G >
find_edge(int fc_node_index)core::pack::interaction_graph::BackgroundNode< V, E, G >
FirstClassNodeVector typedefcore::pack::interaction_graph::BackgroundNode< V, E, G >
get_adjacent_first_class_node(int index) const core::pack::interaction_graph::BackgroundNode< V, E, G >inlineprotected
get_alt_hASA()core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
get_current_hASA()core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
get_edge_vector_up_to_date() const core::pack::interaction_graph::BackgroundNode< V, E, G >inlineprotected
get_incident_edge(int index) const core::pack::interaction_graph::BackgroundNode< V, E, G >inlineprotected
get_index_of_adjacent_first_class_node(int index) const core::pack::interaction_graph::BackgroundNode< V, E, G >inlineprotected
get_node_index() const core::pack::interaction_graph::BackgroundNode< V, E, G >inlineprotected
get_num_incident_edges() const core::pack::interaction_graph::BackgroundNode< V, E, G >inlineprotected
get_owner() const core::pack::interaction_graph::BackgroundNode< V, E, G >inlineprotected
get_surface_bg_edge(int index)core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >inlineprotected
get_surface_owner() const core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >inlineprotected
get_surface_score() const core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
hASA_energy(Real patch_area) const core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
have_prepared_for_simA_core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >private
init_hASA_variables()core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
initialize_num_neighbors_counting_self() const core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
INTERACTION_RADIUScore::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >privatestatic
is_below_buried_residue_no_hsasa_cutoff() const core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
is_below_buried_residue_no_hsasa_cutoff(bool value)core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
is_below_buried_residue_no_hsasa_cutoff_core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >private
is_surface_exposed() const core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
MAX_PATCH_SURFACE_AREAcore::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >privatestatic
MAX_SURFACE_ENERGYcore::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >privatestatic
num_neighbors_counting_self() const core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
num_neighbors_counting_self_core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >mutableprivate
operator=(SurfaceBackgroundNode< V, E, G > const &)core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >private
parent typedefcore::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
prepare_for_simulated_annealing() overridecore::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >virtual
print() const overridecore::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >virtual
project_surface_deltaE_for_substitution(SurfaceNode< V, E, G > *fc_node_changing, int changing_nodes_curr_state, int changing_nodes_alt_state)core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
reset_alt_state_total_hASA()core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
surface_energy_weight_core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >privatestatic
surface_exposed(bool value)core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
surface_exposed_core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >private
SURFACE_EXPOSED_CUTOFFcore::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >privatestatic
SurfaceBackgroundNode(AdditionalBackgroundNodesInteractionGraph< V, E, G > *owner, int node_index)core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >
SurfaceBackgroundNode()core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >private
SurfaceBackgroundNode(SurfaceBackgroundNode< V, E, G > const &)core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >private
update_edge_vector()core::pack::interaction_graph::BackgroundNode< V, E, G >protected
wt_residue_for_node() const core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >inline
~BackgroundNode()core::pack::interaction_graph::BackgroundNode< V, E, G >virtual
~SurfaceBackgroundNode() overridecore::pack::interaction_graph::SurfaceBackgroundNode< V, E, G >