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protocols::optimize_weights::PNatRotOptEPositionData Member List

This is the complete list of members for protocols::optimize_weights::PNatRotOptEPositionData, including all inherited members.

aa() const protocols::optimize_weights::PNatRotOptEPositionData
aa()protocols::optimize_weights::PNatRotOptEPositionData
aa_protocols::optimize_weights::PNatRotOptEPositionDataprivate
add_rotamer_line_data(PNatRotOptERotamerDataOP rot_in)protocols::optimize_weights::PNatRotOptEPositionData
count_rotamer_as_native(PNatRotOptERotamerDataOP rotamer) const protocols::optimize_weights::PNatRotOptEPositionData
data()protocols::optimize_weights::PNatRotOptEPositionData
data() const protocols::optimize_weights::PNatRotOptEPositionData
data_protocols::optimize_weights::PNatRotOptEPositionDataprivate
EnergyMap typedefprotocols::optimize_weights::OptEPositionData
get_score(Multivec const &component_weights, Multivec const &vars, Multivec &dE_dvars, core::Size const num_energy_dofs, int const num_ref_dofs, int const num_total_dofs, EnergyMap const &fixed_terms, ScoreTypes const &score_list, ScoreTypes const &fixed_score_list) const overrideprotocols::optimize_weights::PNatRotOptEPositionDatavirtual
is_native_rotamer_well(utility::vector1< core::Size > const &rotamer_index) const protocols::optimize_weights::PNatRotOptEPositionDataprivate
is_native_rotamer_well(utility::LexicographicalIterator const &lexiter) const protocols::optimize_weights::PNatRotOptEPositionDataprivate
memory_use() const overrideprotocols::optimize_weights::PNatRotOptEPositionDatavirtual
Multivec typedefprotocols::optimize_weights::OptEPositionData
n_wells_protocols::optimize_weights::PNatRotOptEPositionDataprivate
native_chi_protocols::optimize_weights::PNatRotOptEPositionDataprivate
native_chi_periodicity_protocols::optimize_weights::PNatRotOptEPositionDataprivate
native_rotamer_index_protocols::optimize_weights::PNatRotOptEPositionDataprivate
OptEPositionData()protocols::optimize_weights::OptEPositionData
phi() const protocols::optimize_weights::PNatRotOptEPositionData
phi()protocols::optimize_weights::PNatRotOptEPositionData
phi_protocols::optimize_weights::PNatRotOptEPositionDataprivate
PNatRotOptEPositionData()protocols::optimize_weights::PNatRotOptEPositionData
print_score(std::ostream &ostr, Multivec const &component_weights, Multivec const &vars, Multivec &dE_dvars, core::Size const num_energy_dofs, int const num_ref_dofs, int const num_total_dofs, EnergyMap const &fixed_terms, ScoreTypes const &score_list, ScoreTypes const &fixed_score_list) const overrideprotocols::optimize_weights::PNatRotOptEPositionDatavirtual
process_score(std::ostream &ostr, bool print, Multivec const &component_weights, Multivec const &vars, Multivec &dE_dvars, core::Size const num_energy_dofs, int const, int const, EnergyMap const &fixed_terms, ScoreTypes const &, ScoreTypes const &fixed_score_list) const protocols::optimize_weights::PNatRotOptEPositionData
psi() const protocols::optimize_weights::PNatRotOptEPositionData
psi()protocols::optimize_weights::PNatRotOptEPositionData
psi_protocols::optimize_weights::PNatRotOptEPositionDataprivate
range(ScoreTypes const &free_score_list, ScoreTypes const &fixed_score_list, EnergyMap &lower_bound, EnergyMap &upper_bound) const overrideprotocols::optimize_weights::PNatRotOptEPositionDatavirtual
read_from_binary_file(std::ifstream &infile) overrideprotocols::optimize_weights::PNatRotOptEPositionDatavirtual
read_from_file(std::ifstream &infile) overrideprotocols::optimize_weights::PNatRotOptEPositionDatavirtual
Real typedefprotocols::optimize_weights::OptEPositionData
rotamer_data_begin() const protocols::optimize_weights::PNatRotOptEPositionData
rotamer_data_end() const protocols::optimize_weights::PNatRotOptEPositionData
rotamer_index_2_well_id(utility::vector1< core::Size > const &rotamer_index) const protocols::optimize_weights::PNatRotOptEPositionDataprivate
rotamer_index_2_well_id(utility::LexicographicalIterator const &lexiter) const protocols::optimize_weights::PNatRotOptEPositionDataprivate
rotamer_well_counts_protocols::optimize_weights::PNatRotOptEPositionDataprivate
ScoreTypes typedefprotocols::optimize_weights::OptEPositionData
set_native_chi_periodicity(utility::vector1< Real > const &native_chi_periodicity)protocols::optimize_weights::PNatRotOptEPositionData
set_native_rotamer_chi(utility::vector1< Real > const &native_chi)protocols::optimize_weights::PNatRotOptEPositionData
set_native_rotamer_index(utility::vector1< core::Size > const &native_rotamer_index)protocols::optimize_weights::PNatRotOptEPositionData
set_rotamer_well_counts(utility::vector1< core::Size > const &rotamer_well_counts)protocols::optimize_weights::PNatRotOptEPositionData
size() const overrideprotocols::optimize_weights::PNatRotOptEPositionDatavirtual
Size typedefprotocols::optimize_weights::OptEPositionData
tag(std::string const &tag_in)protocols::optimize_weights::OptEPositionData
tag() const protocols::optimize_weights::OptEPositionData
type() const overrideprotocols::optimize_weights::PNatRotOptEPositionDatavirtual
update_range(SingleStructureDataCOP structure, ScoreTypes const &free_score_list, ScoreTypes const &fixed_score_list, EnergyMap &lower_bound, EnergyMap &upper_bound) const protocols::optimize_weights::OptEPositionDataprotected
write_to_binary_file(std::ofstream &outfile) const overrideprotocols::optimize_weights::PNatRotOptEPositionDatavirtual
write_to_file(std::ofstream &outfile) const overrideprotocols::optimize_weights::PNatRotOptEPositionDatavirtual
~OptEPositionData() overrideprotocols::optimize_weights::OptEPositionData
~PNatRotOptEPositionData() overrideprotocols::optimize_weights::PNatRotOptEPositionData