#include <FNatFilter.hh>
Public Member Functions | |
| FNatFilter () | |
| FNatFilter (protocols::docking::DockJumps const movable_jumps, core::Real const threshold, core::pose::PoseOP reference_pose) | |
| bool | apply (core::pose::Pose const &pose) const override |
| Returns true if the given pose passes the filter, false otherwise. More... | |
| protocols::filters::FilterOP | clone () const override |
| protocols::filters::FilterOP | fresh_instance () const override |
| void | report (std::ostream &out, core::pose::Pose const &pose) const override |
| core::Real | report_sm (core::pose::Pose const &pose) const override |
| used to report filter internals through a score or silent file More... | |
| core::Real | compute (core::pose::Pose const &pose) const |
| ~FNatFilter () override | |
| void | parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data_map) override |
| Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More... | |
| std::string | name () const override |
 Public Member Functions inherited from protocols::filters::Filter | |
| Filter () | |
| Filter (std::string const &) | |
| ~Filter () override | |
| virtual std::string | get_type () const |
| std::string | get_user_defined_name () const |
| void | set_user_defined_name (std::string const &name) |
| virtual void | clear () |
| used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More... | |
| virtual core::Real | score (core::pose::Pose &pose) |
| virtual void | provide_citation_info (basic::citation_manager::CitationCollectionList &) const |
| Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More... | |
Static Public Member Functions | |
| static std::string | class_name () |
| static void | provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd) |
Private Attributes | |
| core::Real | threshold_ |
| core::pose::PoseCOP | reference_pose_ |
| protocols::docking::DockJumps | movable_jumps_ |
| core::scoring::ScoreFunctionOP | scorefxn_ |
Additional Inherited Members | |
| Protected Attributes inherited from protocols::filters::Filter | |
| std::string | scorename_ |
Constructor & Destructor Documentation
◆ FNatFilter() [1/2]
| protocols::protein_interface_design::filters::FNatFilter::FNatFilter | ( | ) |
◆ FNatFilter() [2/2]
| protocols::protein_interface_design::filters::FNatFilter::FNatFilter | ( | protocols::docking::DockJumps const | movable_jumps, |
| core::Real const | threshold, | ||
| core::pose::PoseOP | reference_pose | ||
| ) |
◆ ~FNatFilter()
|
overridedefault |
Member Function Documentation
◆ apply()
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overridevirtual |
Returns true if the given pose passes the filter, false otherwise.
Implements protocols::filters::Filter.
References compute(), threshold_, and protocols::protein_interface_design::filters::TR().
◆ class_name()
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static |
◆ clone()
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overridevirtual |
Implements protocols::filters::Filter.
◆ compute()
| core::Real protocols::protein_interface_design::filters::FNatFilter::compute | ( | core::pose::Pose const & | pose | ) | const |
References protocols::docking::calc_Fnat(), movable_jumps_, reference_pose_, and scorefxn_.
Referenced by apply(), report(), and report_sm().
◆ fresh_instance()
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inlineoverridevirtual |
Implements protocols::filters::Filter.
◆ name()
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overridevirtual |
Reimplemented from protocols::filters::Filter.
References class_name().
◆ parse_my_tag()
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overridevirtual |
Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.
Reimplemented from protocols::filters::Filter.
References class_name(), core::scoring::get_score_function_name(), protocols::rosetta_scripts::legacy_saved_pose_or_input(), movable_jumps_, core::scoring::parse_score_function(), reference_pose_, scorefxn_, threshold_, and protocols::protein_interface_design::filters::TR().
◆ provide_xml_schema()
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static |
References core::scoring::attributes_for_parse_score_function(), protocols::rosetta_scripts::attributes_for_saved_reference_pose(), class_name(), and protocols::filters::xsd_type_definition_w_attributes().
Referenced by protocols::protein_interface_design::filters::FNatFilterCreator::provide_xml_schema().
◆ report()
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overridevirtual |
Reimplemented from protocols::filters::Filter.
References compute(), and core::conformation::membrane::out.
◆ report_sm()
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overridevirtual |
used to report filter internals through a score or silent file
Reimplemented from protocols::filters::Filter.
References compute().
Member Data Documentation
◆ movable_jumps_
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private |
Referenced by compute(), and parse_my_tag().
◆ reference_pose_
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private |
Referenced by compute(), and parse_my_tag().
◆ scorefxn_
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private |
Referenced by compute(), and parse_my_tag().
◆ threshold_
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private |
Referenced by apply(), and parse_my_tag().
The documentation for this class was generated from the following files:
- src/protocols/protein_interface_design/filters/FNatFilter.hh
- src/protocols/protein_interface_design/filters/FNatFilter.cc
