protocols::simple_filters::DisulfideEntropyFilter Class Reference

#include <DisulfideEntropyFilter.hh>

Inheritance diagram for protocols::simple_filters::DisulfideEntropyFilter:

Public Member Functions
	DisulfideEntropyFilter ()
	DisulfideEntropyFilter (core::Real tightness_, core::Real lower_bound_)
	DisulfideEntropyFilter (DisulfideEntropyFilter const &src)
	~DisulfideEntropyFilter () override
bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...
filters::FilterOP	clone () const override
filters::FilterOP	fresh_instance () const override
void	report (std::ostream &out, core::pose::Pose const &pose) const override
core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...
core::Real	compute_residual (core::pose::Pose const &pose) const
core::Real	compute (core::pose::Pose const &pose) const
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
core::Real	lower_bound () const
void	lower_bound (core::Real value)
core::Real	tightness () const
void	tightness (core::Real value)
std::string	name () const override
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	~Filter () override
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::Real	tightness_
core::Real	lower_bound_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

DisulfideEntropyFilter() [1/3]

protocols::simple_filters::DisulfideEntropyFilter::DisulfideEntropyFilter

(

)

DisulfideEntropyFilter() [2/3]

protocols::simple_filters::DisulfideEntropyFilter::DisulfideEntropyFilter	(	core::Real	tightness_,
		core::Real	lower_bound_
	)

DisulfideEntropyFilter() [3/3]

protocols::simple_filters::DisulfideEntropyFilter::DisulfideEntropyFilter

(

DisulfideEntropyFilter const &

src

)

~DisulfideEntropyFilter()

protocols::simple_filters::DisulfideEntropyFilter::~DisulfideEntropyFilter ( )

overridedefault

Member Function Documentation

apply()

bool protocols::simple_filters::DisulfideEntropyFilter::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), core::conformation::Residue::is_bonded(), lower_bound_, core::pose::Pose::residue(), core::pose::Pose::size(), tightness_, and protocols::simple_filters::TR().

class_name()

std::string protocols::simple_filters::DisulfideEntropyFilter::class_name ( )

static

Referenced by protocols::simple_filters::DisulfideEntropyFilterCreator::keyname(), name(), and provide_xml_schema().

clone()

filters::FilterOP protocols::simple_filters::DisulfideEntropyFilter::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

compute()

core::Real protocols::simple_filters::DisulfideEntropyFilter::compute

(

core::pose::Pose const &

pose

)

const

References protocols::simple_filters::determinant(), core::conformation::Residue::is_bonded(), core::pose::Pose::residue(), and core::pose::Pose::size().

Referenced by apply(), compute_residual(), report(), and report_sm().

compute_residual()

core::Real protocols::simple_filters::DisulfideEntropyFilter::compute_residual

(

core::pose::Pose const &

pose

)

const

References compute(), core::conformation::Residue::is_bonded(), core::pose::Pose::residue(), and core::pose::Pose::size().

fresh_instance()

filters::FilterOP protocols::simple_filters::DisulfideEntropyFilter::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

lower_bound() [1/2]

core::Real protocols::simple_filters::DisulfideEntropyFilter::lower_bound

(

)

const

References lower_bound_.

Referenced by parse_my_tag().

lower_bound() [2/2]

void protocols::simple_filters::DisulfideEntropyFilter::lower_bound

(

core::Real

value

)

References lower_bound_.

name()

std::string protocols::simple_filters::DisulfideEntropyFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

parse_my_tag()

void protocols::simple_filters::DisulfideEntropyFilter::parse_my_tag ( utility::tag::TagCOP  , basic::datacache::DataMap &    )

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References lower_bound(), tightness(), and protocols::simple_filters::TR().

provide_xml_schema()

void protocols::simple_filters::DisulfideEntropyFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

References class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::simple_filters::DisulfideEntropyFilterCreator::provide_xml_schema().

report()

void protocols::simple_filters::DisulfideEntropyFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute(), and core::conformation::membrane::out.

report_sm()

core::Real protocols::simple_filters::DisulfideEntropyFilter::report_sm ( core::pose::Pose const &  ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

tightness() [1/2]

core::Real protocols::simple_filters::DisulfideEntropyFilter::tightness

(

)

const

References tightness_.

Referenced by parse_my_tag().

tightness() [2/2]

void protocols::simple_filters::DisulfideEntropyFilter::tightness

(

core::Real

value

)

References tightness_.

Member Data Documentation

lower_bound_

core::Real protocols::simple_filters::DisulfideEntropyFilter::lower_bound_

private

Referenced by apply(), and lower_bound().

tightness_

core::Real protocols::simple_filters::DisulfideEntropyFilter::tightness_

private

Referenced by apply(), and tightness().

---

The documentation for this class was generated from the following files:

• src/protocols/simple_filters/DisulfideEntropyFilter.hh
• src/protocols/simple_filters/DisulfideEntropyFilter.cc