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Clustering.cc File Reference
#include <vector>
#include <cstdlib>
#include <cstring>
#include <fstream>
#include <iostream>
#include <iomanip>
#include <math.h>
#include <assert.h>
#include <time.h>
#include <numeric/random/random.hh>
#include <protocols/cluster/calibur/rmsd.hh>
#include <protocols/cluster/calibur/Clustering.hh>
#include <protocols/cluster/calibur/AdjacentList.hh>
#include <protocols/cluster/calibur/InitCluster.hh>
#include <utility/exit.hh>
#include <core/types.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::cluster
 
 protocols::cluster::calibur
 

Macros

#define _MATRIX_MODE_LIMIT_   13000
 
#define _SHOW_PERCENTAGE_COMPLETE_
 
#define _OVER_RMSD_   9999999
 
#define REFERENCE_SIZE   6
 
#define RANDOM_DECOY_SIZE_FOR_FILTERING   101
 
#define RANDOM_DECOY_SIZE_FOR_THRESHOLD   101
 
#define NUM_TRIALS_FOR_THRESHOLD   16
 
#define DEFAULT_PERCENTILE_FOR_THRESHOLD   10
 
#define MAX_PERCENTILE_FOR_THRESHOLD   50
 
#define MIN_PERCENTILE_FOR_THRESHOLD   3
 

Functions

static int protocols::cluster::calibur::__cmp (const void *a, const void *b)
 

Macro Definition Documentation

#define _MATRIX_MODE_LIMIT_   13000
#define _OVER_RMSD_   9999999
#define _SHOW_PERCENTAGE_COMPLETE_
#define DEFAULT_PERCENTILE_FOR_THRESHOLD   10
#define MAX_PERCENTILE_FOR_THRESHOLD   50
#define MIN_PERCENTILE_FOR_THRESHOLD   3
#define NUM_TRIALS_FOR_THRESHOLD   16
#define RANDOM_DECOY_SIZE_FOR_FILTERING   101
#define RANDOM_DECOY_SIZE_FOR_THRESHOLD   101
#define REFERENCE_SIZE   6