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protocols::pose_length_moves::NearNativeLoopCloser Member List

This is the complete list of members for protocols::pose_length_moves::NearNativeLoopCloser, including all inherited members.

allowed_loop_abegos_protocols::pose_length_moves::NearNativeLoopCloserprivate
apply(Pose &pose) overrideprotocols::pose_length_moves::NearNativeLoopCloservirtual
chainAfterLoop_protocols::pose_length_moves::NearNativeLoopCloserprivate
chainBeforeLoop_protocols::pose_length_moves::NearNativeLoopCloserprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::pose_length_moves::NearNativeLoopCloserinlinevirtual
close_loop(Pose &pose)protocols::pose_length_moves::NearNativeLoopCloser
closure_type_protocols::pose_length_moves::NearNativeLoopCloserprivate
combine_chains(Pose &pose)protocols::pose_length_moves::NearNativeLoopCloser
create()protocols::moves::Movervirtual
create_maximum_length_pose(char resTypeBeforeLoop, char resTypeAfterLoop, core::pose::Pose pose)protocols::pose_length_moves::NearNativeLoopCloser
create_potential_loops(core::pose::Pose pose)protocols::pose_length_moves::NearNativeLoopCloser
extendRegion(bool towardCTerm, core::Size resStart, char neighborResType, core::Size numberAddRes, core::pose::PoseOP &poseOP)protocols::pose_length_moves::NearNativeLoopCloser
fresh_instance() const protocols::moves::Movervirtual
get_additional_output() overrideprotocols::pose_length_moves::NearNativeLoopCloservirtual
get_additional_output_with_rmsd(core::Real &return_rmsd)protocols::pose_length_moves::NearNativeLoopCloser
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const overrideprotocols::pose_length_moves::NearNativeLoopCloservirtual
get_native_pose() const protocols::moves::Mover
get_self_ptr() const protocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() const protocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() const protocols::moves::Moverinline
ideal_protocols::pose_length_moves::NearNativeLoopCloserprivate
idealExtension_protocols::pose_length_moves::NearNativeLoopCloserprivate
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
loopLengthRangeHigh_protocols::pose_length_moves::NearNativeLoopCloserprivate
loopLengthRangeLow_protocols::pose_length_moves::NearNativeLoopCloserprivate
max_vdw_change_protocols::pose_length_moves::NearNativeLoopCloserprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_name()protocols::pose_length_moves::NearNativeLoopCloserstatic
name()protocols::moves::Moverinlinestatic
NearNativeLoopCloser()protocols::pose_length_moves::NearNativeLoopCloser
NearNativeLoopCloser(int resAdjustmentStartLow, int resAdjustmentStartHigh, int resAdjustmentStopLow, int resAdjustmentStopHigh, int resAdjustmentStartLow_sheet, int resAdjustmentStartHigh_sheet, int resAdjustmentStopLow_sheet, int resAdjustmentStopHigh_sheet, core::Size loopLengthRangeLow, core::Size loopLengthRangeHigh, core::Size resBeforeLoop, core::Size resAfterLoop, char chainBeforeLoop, char chainAfterLoop, core::Real rmsThreshold, core::Real max_vdw_change, bool idealExtension, bool ideal, bool output_closed, std::string closure_type="lookback", std::string allowed_loop_abegos="")protocols::pose_length_moves::NearNativeLoopCloser
output_all_protocols::pose_length_moves::NearNativeLoopCloserprivate
output_closed_protocols::pose_length_moves::NearNativeLoopCloserprivate
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &datamap) overrideprotocols::pose_length_moves::NearNativeLoopCloservirtual
Pose typedefprotocols::moves::Mover
pose_name_protocols::pose_length_moves::NearNativeLoopCloserprivate
PoseCOP typedefprotocols::moves::Mover
possibleLoops_protocols::pose_length_moves::NearNativeLoopCloserprivate
provide_citation_info(basic::citation_manager::CitationCollectionList &) const protocols::moves::Movervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::pose_length_moves::NearNativeLoopCloserstatic
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
resAdjustmentStartHigh_protocols::pose_length_moves::NearNativeLoopCloserprivate
resAdjustmentStartHigh_sheet_protocols::pose_length_moves::NearNativeLoopCloserprivate
resAdjustmentStartLow_protocols::pose_length_moves::NearNativeLoopCloserprivate
resAdjustmentStartLow_sheet_protocols::pose_length_moves::NearNativeLoopCloserprivate
resAdjustmentStopHigh_protocols::pose_length_moves::NearNativeLoopCloserprivate
resAdjustmentStopHigh_sheet_protocols::pose_length_moves::NearNativeLoopCloserprivate
resAdjustmentStopLow_protocols::pose_length_moves::NearNativeLoopCloserprivate
resAdjustmentStopLow_sheet_protocols::pose_length_moves::NearNativeLoopCloserprivate
resAfterLoop_protocols::pose_length_moves::NearNativeLoopCloserprivate
resBeforeLoop_protocols::pose_length_moves::NearNativeLoopCloserprivate
reset_status()protocols::moves::Mover
rmsThreshold_protocols::pose_length_moves::NearNativeLoopCloserprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_type(std::string const &setting)protocols::moves::Moverinline
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
SSHashedFragmentStore_protocols::pose_length_moves::NearNativeLoopCloserprivate
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
top_outputed_protocols::pose_length_moves::NearNativeLoopCloserprivate
type(const std::string &type_in)protocols::moves::Moverinline
type() const protocols::moves::Moverinline