Rosetta  2021.16
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util.hh File Reference

utility functions for handling of symmetric conformations More...

#include <core/conformation/symmetry/SymmetricConformation.fwd.hh>
#include <core/conformation/Conformation.fwd.hh>
#include <core/conformation/symmetry/SymmData.fwd.hh>
#include <core/conformation/symmetry/SymmetryInfo.fwd.hh>
#include <core/kinematics/FoldTree.fwd.hh>
#include <core/types.hh>
#include <utility/vector1.fwd.hh>
#include <map>

Namespaces

 core
 A class for reading in the atom type properties.
 
 core::conformation
 
 core::conformation::symmetry
 

Functions

std::string core::conformation::symmetry::get_chain_id_string ()
 
bool core::conformation::symmetry::is_symmetric (conformation::Conformation const &conf)
 
bool core::conformation::symmetry::is_mirror_symmetric (conformation::Conformation const &conf)
 
bool core::conformation::symmetry::is_symmetric (conformation::symmetry::SymmetryInfo const &symminfo)
 
conformation::symmetry::SymmetricConformationOP core::conformation::symmetry::setup_symmetric_conformation (conformation::Conformation &src_conformation, conformation::symmetry::SymmData &symmdata, std::map< core::Size, char > src_conf2pdb_chain)
 
kinematics::FoldTree core::conformation::symmetry::set_fold_tree_from_symm_data (conformation::Conformation &src_conformation, conformation::symmetry::SymmData &symmdata, std::map< core::Size, char > src_conf2pdb_chain)
 
kinematics::FoldTree core::conformation::symmetry::replaced_symmetric_foldtree_with_new_monomer (kinematics::FoldTree symm_f, conformation::symmetry::SymmetryInfo symmetry_info, kinematics::FoldTree monomer_f)
 
void core::conformation::symmetry::recenter (conformation::Conformation &src_conformation, conformation::symmetry::SymmData &symmdata)
 
void core::conformation::symmetry::shift_jump_numbers_in_dofs (conformation::Conformation &conformation, Size shift)
 
kinematics::FoldTree core::conformation::symmetry::get_asymm_unit_fold_tree (core::conformation::Conformation const &conf)
 
void core::conformation::symmetry::symmetrize_fold_tree (core::conformation::Conformation const &conf, kinematics::FoldTree &f)
 Converts an asymmetric foldtree (f) with virtual root into a symmetric foldtree compatible with symmetric conformation (conf) More...
 
void core::conformation::symmetry::set_asymm_unit_fold_tree (core::conformation::Conformation &conf, kinematics::FoldTree const &f)
 
int core::conformation::symmetry::residue_center_of_mass (conformation::Conformation const &conformation, int const start, int const stop)
 
int core::conformation::symmetry::return_nearest_residue (conformation::Conformation const &conformation, int const begin, int const end, Vector center)
 
std::string core::conformation::symmetry::show_foldtree (core::conformation::symmetry::SymmetricConformation const &symm_conf, SymmData const &symmdata, std::map< char, std::pair< Size, Size > > const &chain2range)
 
void core::conformation::symmetry::calculate_inverting_virtuals (core::kinematics::FoldTree const &ft, Conformation const &conf, SymmetryInfo const &symm_info, utility::vector1< bool > &mirrored_subs, utility::vector1< std::pair< bool, bool > > &mirrored_jumps)
 A very specific helper function that counts the number of mirror ops from root->each subunit More...
 

Detailed Description

utility functions for handling of symmetric conformations

Author
Ingemar Andre