protocols::indexed_structure_store::search::StructureDatabase Class Reference

#include <QueryDatabase.hh>

Public Types
typedef std::map< Index, StructureData >	StructureDataMap

Public Member Functions
void	initialize (ndarray::Array< ResidueEntry, 1 > residue_entries)
void	initialize (ndarray::Array< SearchReal, 3, 3 > coordinate_buffer, ndarray::Array< Index, 1 > structure_endpoints, ndarray::Array< Index, 1 > chain_endpoints)
StructureData &	get_structure_data (Index structure_id)

Public Attributes
StructureDataMap	structure_data

Private Member Functions
void	initialize_structure_data_from_buffer (StructureData &structure_data, ndarray::Array< SearchReal, 3, 3 > coordinate_buffer, ndarray::Array< Index, 1 > structure_endpoints, ndarray::Array< Index, 1 > chain_endpoints, Index &structure_endpoint_index, Index &chain_endpoint_index, Index &current_structure_start)

Member Typedef Documentation

typedef std::map<Index, StructureData> protocols::indexed_structure_store::search::StructureDatabase::StructureDataMap

Member Function Documentation

StructureData& protocols::indexed_structure_store::search::StructureDatabase::get_structure_data ( Index  structure_id )

inline

References structure_data.

Referenced by protocols::indexed_structure_store::search::bind_QueryDatabase().

void protocols::indexed_structure_store::search::StructureDatabase::initialize

(

ndarray::Array< ResidueEntry, 1 >

residue_entries

)

References protocols::indexed_structure_store::orient_array(), and v_to_a().

Referenced by protocols::indexed_structure_store::search::bind_QueryDatabase().

void protocols::indexed_structure_store::search::StructureDatabase::initialize	(	ndarray::Array< SearchReal, 3, 3 >	coordinate_buffer,
		ndarray::Array< Index, 1 >	structure_endpoints,
		ndarray::Array< Index, 1 >	chain_endpoints
	)

References initialize_structure_data_from_buffer(), and structure_data.

void protocols::indexed_structure_store::search::StructureDatabase::initialize_structure_data_from_buffer ( StructureData &  structure_data, ndarray::Array< SearchReal, 3, 3 >  coordinate_buffer, ndarray::Array< Index, 1 >  structure_endpoints, ndarray::Array< Index, 1 >  chain_endpoints, Index &  structure_endpoint_index, Index &  chain_endpoint_index, Index &  current_structure_start  )

private

References protocols::indexed_structure_store::search::StructureData::initialize().

Referenced by initialize().

Member Data Documentation

StructureDataMap protocols::indexed_structure_store::search::StructureDatabase::structure_data

Referenced by protocols::indexed_structure_store::search::PairQueryExecutor::execute(), protocols::indexed_structure_store::search::SingleQueryExecutor::execute(), get_structure_data(), and initialize().

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The documentation for this class was generated from the following files:

• src/protocols/indexed_structure_store/search/QueryDatabase.hh
• src/protocols/indexed_structure_store/search/QueryDatabase.cc