Rosetta  2021.16
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FragmentCandidate.cc File Reference
#include <core/types.hh>
#include <protocols/frag_picker/FragmentCandidate.hh>
#include <protocols/frag_picker/VallChunk.hh>
#include <protocols/frag_picker/VallProvider.hh>
#include <ObjexxFCL/string.functions.hh>
#include <basic/Tracer.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/OptionKeys.hh>
#include <basic/options/keys/frags.OptionKeys.gen.hh>
#include <core/io/silent/SilentStructFactory.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/fragment/util.hh>
#include <core/pose/util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/pack/task/PackerTask.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/AtomTreeMinimizer.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/util/SwitchResidueTypeSet.hh>
#include <core/chemical/ChemicalManager.fwd.hh>
#include <core/chemical/VariantType.hh>
#include <core/conformation/Conformation.hh>
#include <core/scoring/rms_util.hh>
#include <numeric/model_quality/rms.hh>
#include <protocols/relax/FastRelax.hh>
#include <protocols/relax/RelaxProtocolBase.hh>
#include <protocols/relax/util.hh>
#include <protocols/simple_filters/RmsdEvaluator.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <utility/string_util.hh>
#include <utility/io/izstream.hh>
#include <utility/exit.hh>
#include <utility/vector1.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::frag_picker
 

Functions

static basic::Tracer protocols::frag_picker::trFragmentCandidate ("protocols.frag_picker.FragmentCandidate")
 
utility::vector1
< FragmentCandidateOP > 
protocols::frag_picker::read_fragment_candidates (std::string file_name, VallProviderOP chunk_owner, core::Size max_nfrags_per_pos)