Public Types | Public Member Functions | Static Public Member Functions | Private Attributes | List of all members
protocols::simple_filters::SSElementLengthFilter Class Reference

#include <SSElementLengthFilter.hh>

Inheritance diagram for protocols::simple_filters::SSElementLengthFilter:
Inheritance graph

Public Types

typedef protocols::filters::Filter Super
typedef protocols::filters::Filter Filter
typedef protocols::filters::FilterOP FilterOP
typedef core::Real Real
typedef core::pose::Pose Pose
typedef std::string String
typedef utility::tag::TagCOP TagCOP
typedef basic::datacache::DataMap DataMap

Public Member Functions

 SSElementLengthFilter ()
 SSElementLengthFilter (SSElementLengthFilter const &rval)
 ~SSElementLengthFilter () override
filters::FilterOP clone () const override
filters::FilterOP fresh_instance () const override
Real report_sm (const Pose &pose) const override
 used to report filter internals through a score or silent file More...
void report (std::ostream &out, const Pose &pose) const override
protocols::loops::Loops get_ss_elements (const Pose &pose) const
 get ss_elements More...
Real compute (const Pose &pose) const
bool apply (const Pose &pose) const override
 Returns true if the given pose passes the filter, false otherwise. More...
void parse_my_tag (TagCOP tag, basic::datacache::DataMap &data) override
 parse xml More...
std::string name () const override
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 Filter (std::string const &)
 ~Filter () override
virtual std::string get_type () const
std::string get_user_defined_name () const
void set_user_defined_name (std::string const &name)
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real score (core::pose::Pose &pose)
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &) const
 Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions

static std::string class_name ()
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes

Real threshold_
bool report_avg_
bool report_longest_
bool report_shortest_
core::select::residue_selector::ResidueSelectorCOP selector_

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_

Member Typedef Documentation

◆ DataMap

◆ Filter

◆ FilterOP

◆ Pose

◆ Real

◆ String

◆ Super

◆ TagCOP

Constructor & Destructor Documentation

◆ SSElementLengthFilter() [1/2]

protocols::simple_filters::SSElementLengthFilter::SSElementLengthFilter ( )

◆ SSElementLengthFilter() [2/2]

protocols::simple_filters::SSElementLengthFilter::SSElementLengthFilter ( SSElementLengthFilter const &  rval)

◆ ~SSElementLengthFilter()

protocols::simple_filters::SSElementLengthFilter::~SSElementLengthFilter ( )

Member Function Documentation

◆ apply()

bool protocols::simple_filters::SSElementLengthFilter::apply ( const Pose pose) const

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), threshold_, and protocols::simple_filters::tr().

◆ class_name()

std::string protocols::simple_filters::SSElementLengthFilter::class_name ( )

◆ clone()

filters::FilterOP protocols::simple_filters::SSElementLengthFilter::clone ( ) const

◆ compute()

Real protocols::simple_filters::SSElementLengthFilter::compute ( const Pose pose) const

◆ fresh_instance()

filters::FilterOP protocols::simple_filters::SSElementLengthFilter::fresh_instance ( ) const

◆ get_ss_elements()

protocols::loops::Loops protocols::simple_filters::SSElementLengthFilter::get_ss_elements ( const Pose pose) const

◆ name()

std::string protocols::simple_filters::SSElementLengthFilter::name ( ) const

Reimplemented from protocols::filters::Filter.

References class_name().

◆ parse_my_tag()

void protocols::simple_filters::SSElementLengthFilter::parse_my_tag ( TagCOP  tag,
basic::datacache::DataMap data 

◆ provide_xml_schema()

void protocols::simple_filters::SSElementLengthFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)

◆ report()

void protocols::simple_filters::SSElementLengthFilter::report ( std::ostream &  out,
const Pose pose 
) const

◆ report_sm()

SSElementLengthFilter::Real protocols::simple_filters::SSElementLengthFilter::report_sm ( const Pose ) const

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

◆ report_avg_

bool protocols::simple_filters::SSElementLengthFilter::report_avg_

Referenced by parse_my_tag().

◆ report_longest_

bool protocols::simple_filters::SSElementLengthFilter::report_longest_

Referenced by compute(), and parse_my_tag().

◆ report_shortest_

bool protocols::simple_filters::SSElementLengthFilter::report_shortest_

Referenced by compute(), and parse_my_tag().

◆ selector_

core::select::residue_selector::ResidueSelectorCOP protocols::simple_filters::SSElementLengthFilter::selector_

Referenced by get_ss_elements(), and parse_my_tag().

◆ threshold_

Real protocols::simple_filters::SSElementLengthFilter::threshold_

Referenced by apply(), and parse_my_tag().

The documentation for this class was generated from the following files: