core::select::residue_selector::ScoreTermValueBasedSelector Class Reference

#include <ScoreTermValueBasedSelector.hh>

Inheritance diagram for core::select::residue_selector::ScoreTermValueBasedSelector:

Public Member Functions
	ScoreTermValueBasedSelector ()
	Constructor. More...
	~ScoreTermValueBasedSelector () override
	@breif Destructor More...
ResidueSelectorOP	clone () const override
	Clone operator. More...
ResidueSubset	apply (core::pose::Pose const &pose) const override
	Return a ResidueSubset indicating a selection of Residues from the input Pose. More...
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &datacache) override
	Initialize any data members of this instance from an input tag and a DataMap object. More...
std::string	get_name () const override
Public Member Functions inherited from core::select::residue_selector::ResidueSelector
	ResidueSelector ()
	Constructor. More...
	~ResidueSelector () override
	Destructor. More...
utility::vector1< core::Size >	selection_positions (core::pose::Pose const &pose) const
	Calls apply and returns the Rosetta numbering corresponding to the selected residues. More...
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()
static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &)
	Define the structure of the XML file for this ResidueSelector. More...

Private Attributes
core::scoring::ScoreFunctionOP	score_fxn_
core::scoring::ScoreType	score_type_
ResidueSelectorCOP	input_residues_selector_
std::string	residue_nums_string_
core::Real	lower_threshold_
core::Real	upper_threshold_

Constructor & Destructor Documentation

ScoreTermValueBasedSelector()

core::select::residue_selector::ScoreTermValueBasedSelector::ScoreTermValueBasedSelector

(

)

Constructor.

~ScoreTermValueBasedSelector()

core::select::residue_selector::ScoreTermValueBasedSelector::~ScoreTermValueBasedSelector ( )

overridedefault

@breif Destructor

Member Function Documentation

apply()

ResidueSubset core::select::residue_selector::ScoreTermValueBasedSelector::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Return a ResidueSubset indicating a selection of Residues from the input Pose.

Implements core::select::residue_selector::ResidueSelector.

References core::scoring::end_of_score_type_enumeration, core::pose::Pose::energies(), core::pose::get_resnum_list(), input_residues_selector_, lower_threshold_, core::scoring::n_score_types, core::conformation::Residue::name3(), core::pose::Pose::residue(), residue_nums_string_, core::scoring::Energies::residue_total_energies(), protocols::hybridization::score, score_fxn_, score_type_, core::pose::Pose::total_residue(), core::select::residue_selector::TR(), and upper_threshold_.

class_name()

std::string core::select::residue_selector::ScoreTermValueBasedSelector::class_name ( )

static

Referenced by get_name(), core::select::residue_selector::ScoreTermValueBasedSelectorCreator::keyname(), and provide_xml_schema().

clone()

ResidueSelectorOP core::select::residue_selector::ScoreTermValueBasedSelector::clone ( ) const

overridevirtual

Clone operator.

Creates a copy of the object and return a pointer to the new object.

Implements core::select::residue_selector::ResidueSelector.

get_name()

std::string core::select::residue_selector::ScoreTermValueBasedSelector::get_name ( ) const

overridevirtual

Implements core::select::residue_selector::ResidueSelector.

References class_name().

parse_my_tag()

void core::select::residue_selector::ScoreTermValueBasedSelector::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  datacache  )

overridevirtual

Initialize any data members of this instance from an input tag and a DataMap object.

Reimplemented from core::select::residue_selector::ResidueSelector.

References core::scoring::end_of_score_type_enumeration, core::select::residue_selector::get_embedded_residue_selector(), core::select::residue_selector::get_residue_selector(), core::scoring::get_score_function(), input_residues_selector_, lower_threshold_, residue_nums_string_, score_fxn_, score_type_, core::scoring::score_type_from_name(), core::select::residue_selector::TR(), and upper_threshold_.

provide_xml_schema()

void core::select::residue_selector::ScoreTermValueBasedSelector::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd )

static

Define the structure of the XML file for this ResidueSelector.

References core::select::residue_selector::attributes_for_parse_residue_selector(), class_name(), and core::select::residue_selector::xsd_type_definition_w_attributes_and_optional_subselector().

Referenced by core::select::residue_selector::ScoreTermValueBasedSelectorCreator::provide_xml_schema().

Member Data Documentation

input_residues_selector_

ResidueSelectorCOP core::select::residue_selector::ScoreTermValueBasedSelector::input_residues_selector_

private

Referenced by apply(), and parse_my_tag().

lower_threshold_

core::Real core::select::residue_selector::ScoreTermValueBasedSelector::lower_threshold_

private

Referenced by apply(), and parse_my_tag().

residue_nums_string_

std::string core::select::residue_selector::ScoreTermValueBasedSelector::residue_nums_string_

private

Referenced by apply(), and parse_my_tag().

score_fxn_

core::scoring::ScoreFunctionOP core::select::residue_selector::ScoreTermValueBasedSelector::score_fxn_

private

Referenced by apply(), and parse_my_tag().

score_type_

core::scoring::ScoreType core::select::residue_selector::ScoreTermValueBasedSelector::score_type_

private

Referenced by apply(), and parse_my_tag().

upper_threshold_

core::Real core::select::residue_selector::ScoreTermValueBasedSelector::upper_threshold_

private

Referenced by apply(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• src/core/select/residue_selector/ScoreTermValueBasedSelector.hh
• src/core/select/residue_selector/ScoreTermValueBasedSelector.cc