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protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter Class Reference

#include <ParallelBetaPairingPreferenceFilter.hh>

Inheritance diagram for protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter:
Inheritance graph

Public Types

typedef protocols::filters::Filter Super
typedef core::Size Size
typedef core::Real Real
typedef core::chemical::AA AA
typedef protocols::filters::Filter Filter
typedef std::string String
typedef core::pose::Pose Pose
typedef utility::tag::TagCOP TagCOP
typedef basic::datacache::DataMap DataMap

Public Member Functions

 ParallelBetaPairingPreferenceFilter ()
 ParallelBetaPairingPreferenceFilter (ParallelBetaPairingPreferenceFilter const &rval)
 ~ParallelBetaPairingPreferenceFilter () override
FilterOP clone () const override
FilterOP fresh_instance () const override
void filter_value (Real const value)
Real compute (Pose const &pose) const
 compute number of contacts More...
Real score_pairmatrix (AA aa1, AA aa2) const
 refer score of residue pair More...
Real report_sm (Pose const &pose) const override
 used to report score More...
void report (std::ostream &out, Pose const &pose) const override
 used to report score More...
bool apply (Pose const &pose) const override
 Returns true if the given pose passes the filter, false otherwise. More...
void parse_my_tag (TagCOP tag, basic::datacache::DataMap &) override
 parse xml More...
std::string name () const override
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 Filter (std::string const &)
 Filter (Filter const &)
 ~Filter () override
virtual std::string get_type () const
std::string get_user_defined_name () const
void set_user_defined_name (std::string const &name)
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real score (core::pose::Pose &pose)
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...

Static Public Member Functions

static std::string class_name ()
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes

Real filter_value_
< utility::vector1< Real > > 
bool verbose_

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::ParallelBetaPairingPreferenceFilter ( )
protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::ParallelBetaPairingPreferenceFilter ( ParallelBetaPairingPreferenceFilter const &  rval)
protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::~ParallelBetaPairingPreferenceFilter ( )

Member Function Documentation

bool protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::apply ( Pose const &  pose) const

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), filter_value_, and protocols::filters::Filter::score().

std::string protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::class_name ( )
FilterOP protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::clone ( ) const
ParallelBetaPairingPreferenceFilter::Real protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::compute ( Pose const &  pose) const
void protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::filter_value ( Real const  value)

References filter_value_.

Referenced by parse_my_tag().

FilterOP protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::fresh_instance ( ) const
std::string protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::name ( ) const

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::parse_my_tag ( TagCOP  tag,
basic::datacache::DataMap &   

parse xml

Reimplemented from protocols::filters::Filter.

References filter_value(), and verbose_.

void protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)
void protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::report ( std::ostream &  out,
Pose const &  pose 
) const

used to report score

report filter results

Reimplemented from protocols::filters::Filter.

References compute().

ParallelBetaPairingPreferenceFilter::Real protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::report_sm ( Pose const &  pose) const

used to report score

return filter value

Reimplemented from protocols::filters::Filter.

References compute().

ParallelBetaPairingPreferenceFilter::Real protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::score_pairmatrix ( AA  aa1,
AA  aa2 
) const

refer score of residue pair

References score_pairmatrix_.

Referenced by compute().

Member Data Documentation

Real protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::filter_value_

Referenced by apply(), and filter_value().

utility::vector1< utility::vector1< Real > > protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::score_pairmatrix_
bool protocols::fldsgn::filters::ParallelBetaPairingPreferenceFilter::verbose_

Referenced by compute(), and parse_my_tag().

The documentation for this class was generated from the following files: