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protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidChecker Member List

This is the complete list of members for protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidChecker, including all inherited members.

allow_base_pair_only_screen() constprotocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerinline
allow_base_pair_only_screen_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
base_pair_axis_cutoff_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
base_pair_dist_max_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
base_pair_dist_min_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
base_pair_planarity_cutoff_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
base_pair_rho_max_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
base_pair_rho_min_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
base_pair_z_offset_cutoff_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
base_stack_axis_cutoff_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
base_stack_dist_cutoff_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
base_stack_planarity_cutoff_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
base_stack_z_offset_max_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
base_stack_z_offset_min_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
base_stub_list_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
block_stack_above_res_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
block_stack_below_res_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
check_base_pair(core::kinematics::Stub const &moving_residue_base_stub, core::kinematics::Stub const &other_base_stub, core::Real const base_axis_CUTOFF, core::Real const base_planarity_CUTOFF) constprotocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
check_base_pair(core::kinematics::Stub const &moving_residue_base_stub, core::Real const base_axis_CUTOFF, core::Real const base_planarity_CUTOFF) constprotocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
check_base_stack(core::kinematics::Stub const &moving_residue_base_stub, core::kinematics::Stub const &other_base_stub, core::Real const base_axis_CUTOFF, core::Real const base_planarity_CUTOFF, core::chemical::rna::BaseStackWhichSide &base_stack_side, bool const verbose=false) constprotocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
check_base_stack(core::kinematics::Stub const &moving_residue_base_stub, core::kinematics::Stub const &other_base_stub, core::Real const base_axis_CUTOFF, core::Real const base_planarity_CUTOFF, bool const verbose=false) constprotocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
check_base_stack(core::kinematics::Stub const &moving_residue_base_stub, core::kinematics::Stub const &other_base_stub, core::chemical::rna::BaseStackWhichSide &base_stack_side)protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
check_base_stack(core::Size const &pos1, core::Size const &pos2, bool const verbose=false)protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
check_base_stack(core::kinematics::Stub const &moving_res_base, core::Real const base_axis_CUTOFF, core::Real const base_planarity_CUTOFF) constprotocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
check_base_stack(core::kinematics::Stub const &moving_residue_base_stub, core::kinematics::Stub const &other_base_stub, bool const verbose=false) constprotocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
check_base_stack_in_partition(core::Size const &block_stack_res, utility::vector1< core::Size > const &other_res, core::chemical::rna::BaseStackWhichSide const &block_stack_side) constprotocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
check_block_stack_res(utility::vector1< core::Size > const &block_stack_res, core::chemical::rna::BaseStackWhichSide const &block_stack_side) constprotocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
check_centroid_interaction(core::kinematics::Stub const &moving_res_base_stub, StepWiseRNA_CountStruct &count_data)protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidChecker
check_centroid_interaction(StepWiseRNA_CountStruct &count_data)protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
check_centroid_interaction_floating_base(core::kinematics::Stub const &moving_res_base_stub, StepWiseRNA_CountStruct &count_data) constprotocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
check_that_terminal_res_are_unstacked(bool const verbose=false)protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidChecker
fixed_residues_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
floating_base_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
found_centroid_interaction() constprotocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerinline
found_centroid_interaction_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
Initialize_base_stub_list(core::pose::Pose const &pose, bool const verbose=false)protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
Initialize_is_virtual_base(core::pose::Pose const &pose, bool const verbose=false)protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
Initialize_terminal_res(core::pose::Pose const &pose)protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
is_fixed_res_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
is_medium_base_stack_and_medium_base_pair(core::kinematics::Stub const &moving_res_base) constprotocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
is_moving_res_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
is_strong_base_stack(core::kinematics::Stub const &moving_res_base) constprotocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
is_terminal_res_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
is_virtual_base_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
moving_residues_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
RNA_BaseCentroidChecker(core::pose::Pose const &pose, working_parameters::StepWiseWorkingParametersCOP &working_parameters, bool const tether_jump=false)protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidChecker
rna_centroid_info_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
set_allow_base_pair_only_screen(bool const setting)protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerinline
set_floating_base(bool const setting)protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerinline
stacked_on_terminal_res_in_original_pose_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
terminal_res_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
tether_jump_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
update_base_stub_list(core::pose::Pose const &pose)protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
update_base_stub_list_and_check_centroid_interaction(core::pose::Pose const &pose, StepWiseRNA_CountStruct &count_data)protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidChecker
update_base_stub_list_and_check_that_terminal_res_are_unstacked(core::pose::Pose const &pose, bool const reinitialize=false)protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidChecker
working_parameters_protocols::stepwise::modeler::rna::checker::RNA_BaseCentroidCheckerprivate
~RNA_BaseCentroidChecker() overrideprotocols::stepwise::modeler::rna::checker::RNA_BaseCentroidChecker