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protocols::stepwise::modeler::rna::rigid_body Namespace Reference

Classes

struct  BaseBin
 
struct  compare_base_bin
 
struct  compare_int_pair
 

Typedefs

typedef std::map< BaseBin, int,
compare_base_bin
BaseBinMap
 

Functions

core::Real get_max_centroid_to_atom_distance (utility::vector1< core::conformation::ResidueOP > const &rsd_at_origin_list, std::string const &atom_name)
 
void initialize_xyz_parameters (Distance &max_distance, Distance &max_distance_squared, int &centroid_bin_min, int &centroid_bin_max, utility::vector1< core::conformation::ResidueOP > const &moving_rsd_at_origin_list, core::Size const gap_size_to_anchor)
 
utility::vector1
< core::pose::PoseOP
setup_pose_with_moving_residue_alternative_list (pose::Pose const &pose, core::Size const &moving_res, bool const extra_chi, bool const use_phenix_geo)
 
int DOF_bin_value (BaseBin const &base_bin, std::string const &DOF)
 
Real DOF_bin_size (std::string const &DOF)
 
void analyze_base_bin_map (std::map< BaseBin, int, compare_base_bin > const &base_bin_map, std::string const &DOF_one, std::string const &DOF_two, std::string const &foldername)
 
void analyze_base_bin_map (std::map< BaseBin, int, compare_base_bin > const &base_bin_map, std::string const &foldername)
 

Typedef Documentation

Function Documentation

void protocols::stepwise::modeler::rna::rigid_body::analyze_base_bin_map ( std::map< BaseBin, int, compare_base_bin > const &  base_bin_map,
std::string const &  DOF_one,
std::string const &  DOF_two,
std::string const &  foldername 
)
void protocols::stepwise::modeler::rna::rigid_body::analyze_base_bin_map ( std::map< BaseBin, int, compare_base_bin > const &  base_bin_map,
std::string const &  foldername 
)
core::Real protocols::stepwise::modeler::rna::rigid_body::DOF_bin_size ( std::string const &  DOF)
int protocols::stepwise::modeler::rna::rigid_body::DOF_bin_value ( BaseBin const &  base_bin,
std::string const &  DOF 
)
core::Real protocols::stepwise::modeler::rna::rigid_body::get_max_centroid_to_atom_distance ( utility::vector1< core::conformation::ResidueOP > const &  rsd_at_origin_list,
std::string const &  atom_name 
)
void protocols::stepwise::modeler::rna::rigid_body::initialize_xyz_parameters ( Distance max_distance,
Distance max_distance_squared,
int &  centroid_bin_min,
int &  centroid_bin_max,
utility::vector1< core::conformation::ResidueOP > const &  moving_rsd_at_origin_list,
core::Size const  gap_size_to_anchor 
)
utility::vector1< core::pose::PoseOP > protocols::stepwise::modeler::rna::rigid_body::setup_pose_with_moving_residue_alternative_list ( pose::Pose const &  pose,
core::Size const &  moving_res,
bool const  extra_chi,
bool const  use_phenix_geo 
)