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StepWiseProteinPoseSetup.cc File Reference
#include <protocols/stepwise/legacy/modeler/protein/StepWiseProteinPoseSetup.hh>
#include <protocols/stepwise/modeler/protein/InputStreamWithResidueInfo.hh>
#include <protocols/stepwise/modeler/align/util.hh>
#include <protocols/stepwise/modeler/util.hh>
#include <protocols/stepwise/modeler/working_parameters/StepWiseWorkingParameters.hh>
#include <protocols/stepwise/modeler/working_parameters/StepWiseWorkingParameters.fwd.hh>
#include <protocols/stepwise/legacy/modeler/protein/util.hh>
#include <protocols/stepwise/modeler/constraint_util.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/ResidueType.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/conformation/Conformation.hh>
#include <core/scoring/func/Func.fwd.hh>
#include <core/scoring/func/FadeFunc.hh>
#include <core/scoring/constraints/AtomPairConstraint.hh>
#include <core/scoring/constraints/ConstraintSet.hh>
#include <core/scoring/constraints/ConstraintIO.hh>
#include <core/scoring/ScoreType.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/types.hh>
#include <core/pose/Pose.hh>
#include <core/pose/full_model_info/FullModelInfo.hh>
#include <core/pose/full_model_info/FullModelParameters.hh>
#include <core/io/raw_data/DisulfideFile.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/variant_util.hh>
#include <core/pose/subpose_manipulation_util.hh>
#include <core/pose/rna/util.hh>
#include <basic/Tracer.hh>
#include <core/id/TorsionID.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/chemical/rna/util.hh>
#include <protocols/stepwise/modeler/rna/util.hh>
#include <ObjexxFCL/FArray1D.hh>
#include <ObjexxFCL/string.functions.hh>
#include <ObjexxFCL/FArray2D.hh>
#include <utility>
#include <utility/stream_util.hh>
#include <utility/exit.hh>
#include <string>
#include <core/scoring/rms_util.hh>
#include <utility/vector1.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::stepwise
 
 protocols::stepwise::legacy
 
 protocols::stepwise::legacy::modeler
 
 protocols::stepwise::legacy::modeler::protein
 

Functions

static basic::Tracer TR ("protocols.stepwise.legacy.modeler.protein.StepWiseProteinPoseSetup")
 
utility::vector1< core::Sizeprotocols::stepwise::legacy::modeler::protein::convert_to_vector1 (ObjexxFCL::FArray1D< core::Size > farray)
 

Function Documentation

static basic::Tracer TR ( "protocols.stepwise.legacy.modeler.protein.StepWiseProteinPoseSetup"  )
static