Rosetta
Classes | Typedefs | Functions
core::pack::task::operation Namespace Reference

Classes

class  ClashBasedRepackShell
 Create a shell of residues that can repack around a smaller group of residues being repacked or designed. More...
 
class  ClashBasedRepackShellCreator
 
class  DesignRestrictions
 Combine a set of ResidueSelectors and ResidueLevelTaskOperations concisely, using boolean logic to join selectors concisely. More...
 
class  DesignRestrictionsCreator
 
class  EnableMultiCoolAnnealer
 Task Operation for turning on the multi-cool annealer. More...
 
class  EnableMultiCoolAnnealerCreator
 
class  EnableSmartAnnealer
 Task Operation for turning on the multi-cool annealer. More...
 
class  EnableSmartAnnealerCreator
 
class  FillAUTOTaskOperation
 fills the AUTO behavior for all residues in Task. Useful if a protocol expects AUTO-style resfile, but no resfile present. More...
 
class  FillAUTOTaskOperationCreator
 
class  KeepSequenceSymmetry
 Task Operation for turning on the multi-cool annealer. More...
 
class  KeepSequenceSymmetryCreator
 
class  NoRepackDisulfides
 prevent disulfides from being repacked; assume disulfides info in Pose is up-to-date More...
 
class  NoRepackDisulfidesCreator
 
class  OperateOnCertainResidues
 
class  OperateOnCertainResiduesCreator
 
class  OperateOnResidueSubset
 Class, much like the OperateOnCertainResidues task operation, to apply a particular residue-level task operation on the residues identified by a ResidueSelector (Or a pre-selected subset). More...
 
class  OperateOnResidueSubsetCreator
 
class  OptCysHG
 run optH on non-disulfided bonded CYS only; meant to relieve any clashes caused by swapping of CYD->CYS after calling Conformation::detect_disulfides() More...
 
class  OptCysHGCreator
 
class  OptH
 run optH; disallowed positions may be set to prevent optimization for those residues More...
 
class  OptHCreator
 
class  ReplicateTask
 
class  ResFilter
 
class  ResFilterCreator
 The ResFilterCreator class's responsibilities are to create on demand a new ResFilter class. The ResFilterCreator must register itself with the ResFilterFactory at load time (before main() begins) so that the ResFilterFactory is ready to start creating ResFilters by the time any protocol requests one. More...
 
class  AnyResFilterCreator
 
class  AllResFilterCreator
 
class  NoResFilterCreator
 
class  ResidueTypeFilterCreator
 
class  ResidueHasPropertyCreator
 
class  ResidueLacksPropertyCreator
 
class  ResiduePDBInfoHasLabelCreator
 
class  ResiduePDBInfoLacksLabelCreator
 
class  ResidueName3IsCreator
 
class  ResidueName3IsntCreator
 
class  ResidueIndexIsCreator
 
class  ResidueIndexIsntCreator
 
class  ResiduePDBIndexIsCreator
 
class  ResiduePDBIndexIsntCreator
 
class  ChainIsCreator
 
class  ChainIsntCreator
 
class  ResFilterFactory
 
class  ResFilterRegistrator
 This templated class will register an instance of an ResFilterCreator (class T) with the ResFilterFactory. It will ensure that no ResFilter creator is registered twice, and, centralizes this registration logic so that thread safety issues can be handled in one place. More...
 
class  ResFilterComposition
 
class  AnyResFilter
 
class  AllResFilter
 
class  NoResFilter
 
class  ResidueTypeFilter
 
class  ResidueHasProperty
 
class  ResidueLacksProperty
 
class  ResiduePDBInfoHasLabel
 
class  ResiduePDBInfoLacksLabel
 
class  ResidueName3Is
 
class  ResidueName3Isnt
 
class  ResidueIndexIs
 
class  ResidueIndexIsnt
 
class  ResiduePDBIndexIs
 
class  ResiduePDBIndexIsnt
 
class  ChainIs
 
class  ChainIsnt
 
class  ResLvlTaskOperation
 
class  ResLvlTaskOperationCreator
 The ResLvlTaskOperationCreator class's responsibilities are to create on demand a new ResLvlTaskOperation class. The ResLvlTaskOperationCreator must register itself with the ResLvlTaskOperationFactory at load time (before main() begins) so that the ResLvlTaskOperationFactory is ready to start creating ResLvlTaskOperations by the time any protocol requests one. More...
 
class  RestrictToRepackingRLTCreator
 
class  RestrictAbsentCanonicalAASRLTCreator
 
class  RestrictAbsentCanonicalAASExceptNativeRLTCreator
 
class  DisallowIfNonnativeRLTCreator
 
class  PreventRepackingRLTCreator
 
class  AddBehaviorRLTCreator
 
class  IncludeCurrentRLTCreator
 
class  PreserveCBetaRLTCreator
 
class  ExtraChiCutoffRLTCreator
 
class  ExtraRotamersGenericRLTCreator
 
class  ResLvlTaskOperationFactory
 
class  ResLvlTaskOperationRegistrator
 This templated class will register an instance of an ResLvlTaskOperationCreator (class T) with the ResLvlTaskOperationFactory. It will ensure that no ResLvlTaskOperation creator is registered twice, and, centralizes this registration logic so that thread safety issues can be handled in one place. More...
 
class  RestrictToRepackingRLT
 
class  RestrictAbsentCanonicalAASRLT
 
class  RestrictAbsentCanonicalAASExceptNativeRLT
 
class  DisallowIfNonnativeRLT
 
class  PreventRepackingRLT
 
class  AddBehaviorRLT
 
class  IncludeCurrentRLT
 
class  PreserveCBetaRLT
 
class  ExtraChiCutoffRLT
 
class  ExtraRotamersGenericRLT
 
class  RestrictInteractionGraphThreadsOperation
 A task operation that restricts the number of threads allowed for interaction graph computation. More...
 
class  RestrictInteractionGraphThreadsOperationCreator
 
class  TaskOperation
 
class  TaskOperationCreator
 The TaskOperationCreator class's responsibilities are to create on demand a new TaskOperation class. The TaskOperationCreator must register itself with the TaskOperationFactory at load time (before main() begins) so that the TaskOperationFactory is ready to start creating TaskOperations by the time any protocol requests one. More...
 
class  RestrictYSDesignCreator
 
class  PreventRepackingCreator
 
class  PreserveCBetaCreator
 
class  AppendRotamerSetCreator
 
class  AppendResidueRotamerSetCreator
 
class  AppendRotamerCreator
 
class  SetRotamerCouplingsCreator
 
class  SetRotamerLinksCreator
 
class  ReadResfileCreator
 
class  ReadResfileAndObeyLengthEventsCreator
 
class  IncludeCurrentCreator
 
class  InitializeExtraRotsFromCommandlineCreator
 
class  InitializeFromCommandlineCreator
 
class  UseMultiCoolAnnealerCreator
 
class  InitializeFromOptionCollectionCreator
 
class  ExtraRotamersGenericCreator
 
class  RotamerExplosionCreator
 
class  RestrictAbsentCanonicalAASCreator
 
class  RestrictToSpecifiedBaseResidueTypesCreator
 
class  ProhibitSpecifiedBaseResidueTypesCreator
 
class  RestrictToResiduePropertiesCreator
 
class  ProhibitResiduePropertiesCreator
 
class  RestrictResidueToRepackingCreator
 
class  RestrictToRepackingCreator
 
class  DisallowIfNonnativeCreator
 
class  ExtraRotamersCreator
 
class  ExtraChiCutoffCreator
 
class  TaskOperationFactory
 
class  TaskOperationRegistrator
 This templated class will register an instance of an TaskOperationCreator (class T) with the TaskOperationFactory. It will ensure that no TaskOperation creator is registered twice, and, centralizes this registration logic so that thread safety issues can be handled in one place. More...
 
class  RestrictToSpecifiedBaseResidueTypes
 Restrict the palette of ResidueTypes to the base ResidueTypes provided by name. More...
 
class  ProhibitSpecifiedBaseResidueTypes
 Prohibit the base ResidueTypes provided by name from the palette of ResidueTypes. More...
 
class  RestrictToResidueProperties
 Restrict the palette of ResidueTypes to those with the given properties. More...
 
class  ProhibitResidueProperties
 Restrict the palette of ResidueTypes to those with the given properties. More...
 
class  RestrictToRepacking
 RestrictToRepacking. More...
 
class  RestrictResidueToRepacking
 RestrictResidueToRepacking. More...
 
class  RestrictAbsentCanonicalAAS
 RestrictAbsentCanonicalAAS. More...
 
class  DisallowIfNonnative
 DisallowIfNonnative allows you to define what residues are NOT allowed in packing unless that residue is present in the input. Behaves like RestrictAbsentCanonicalAAS and NOTAA except will allow a resitricted residue at a position if it is there to begin with at the time of Task creation. Will do all residues unless otherwise defined by selection syntax below. More...
 
class  RotamerExplosion
 rotamer explosion for a residue More...
 
class  InitializeFromCommandline
 
class  UseMultiCoolAnnealer
 
class  InitializeFromOptionCollection
 retrieves an OptionCollection from the DataMap. More...
 
class  InitializeExtraRotsFromCommandline
 
class  IncludeCurrent
 
struct  ExtraRotamerSamplingData
 
class  ExtraRotamersGeneric
 
class  ReadResfile
 
class  ReadResfileAndObeyLengthEvents
 written by flo, feb 2011 class that can apply a resfile to a pose that had its length changed at some point in a protocol. A LengthEventCollector must be set in the pose's observer cache for this to work properly More...
 
class  SetRotamerCouplings
 
class  SetRotamerLinks
 
class  AppendRotamer
 when a PackerTask is created by the Factory, the RotamerOperation will be given to it More...
 
class  AppendRotamerSet
 when a PackerTask is created by the Factory, the RotamerSetOperation will be given to it More...
 
class  AppendResidueRotamerSet
 Apply rotamerSetOperation to only the rotamerSet for the given residue. More...
 
class  PreserveCBeta
 
class  PreventRepacking
 PreventRepacking allows you to prevent repacking (NATRO behavior) through the Factory. Useful if you do not know the residue numbers when the resfile is created. Note that this is unlike RestrictToRepacking; you have to specify which residues. If PreventRepacking worked on the entire Task you'd have a do-nothing task. More...
 
class  RestrictYSDesign
 RestrictYSDesign restricts positions to a binary Tyr/Ser alphabet. More...
 
class  ExtraRotamers
 ExtraRotamer for a residue. You know, -ex1, -ex2, all that. More...
 
class  ExtraChiCutoff
 ExtraChiCutoff (correponding to flag "-extrachi_cutoff <float>" ) More...
 

Typedefs

typedef utility::pointer::shared_ptr< ClashBasedRepackShellClashBasedRepackShellOP
 ClashBasedRepackShell owning pointer. More...
 
typedef utility::pointer::shared_ptr< ClashBasedRepackShell const > ClashBasedRepackShellCOP
 ClashBasedRepackShell const owning pointer. More...
 
typedef utility::pointer::weak_ptr< ClashBasedRepackShellClashBasedRepackShellAP
 ClashBasedRepackShell owning pointer. More...
 
typedef utility::pointer::weak_ptr< ClashBasedRepackShell const > ClashBasedRepackShellCAP
 ClashBasedRepackShell const owning pointer. More...
 
typedef utility::pointer::shared_ptr< DesignRestrictionsDesignRestrictionsOP
 
typedef utility::pointer::shared_ptr< DesignRestrictions const > DesignRestrictionsCOP
 
typedef utility::pointer::shared_ptr< EnableMultiCoolAnnealerEnableMultiCoolAnnealerOP
 
typedef utility::pointer::shared_ptr< EnableMultiCoolAnnealer const > EnableMultiCoolAnnealerCOP
 
using EnableSmartAnnealerOP = utility::pointer::shared_ptr< EnableSmartAnnealer >
 
using EnableSmartAnnealerCOP = utility::pointer::shared_ptr< EnableSmartAnnealer const >
 
typedef utility::pointer::shared_ptr< FillAUTOTaskOperationFillAUTOTaskOperationOP
 
typedef utility::pointer::shared_ptr< FillAUTOTaskOperation const > FillAUTOTaskOperationCOP
 
using KeepSequenceSymmetryOP = utility::pointer::shared_ptr< KeepSequenceSymmetry >
 
using KeepSequenceSymmetryCOP = utility::pointer::shared_ptr< KeepSequenceSymmetry const >
 
typedef utility::pointer::shared_ptr< NoRepackDisulfidesNoRepackDisulfidesOP
 NoRepackDisulfides owning pointer. More...
 
typedef utility::pointer::shared_ptr< NoRepackDisulfides const > NoRepackDisulfidesCOP
 NoRepackDisulfides const owning pointer. More...
 
typedef utility::pointer::weak_ptr< NoRepackDisulfidesNoRepackDisulfidesAP
 NoRepackDisulfides owning pointer. More...
 
typedef utility::pointer::weak_ptr< NoRepackDisulfides const > NoRepackDisulfidesCAP
 NoRepackDisulfides const owning pointer. More...
 
typedef utility::pointer::shared_ptr< OperateOnCertainResiduesOperateOnCertainResiduesOP
 
typedef utility::pointer::shared_ptr< OperateOnCertainResiduesOperateOnCertainResiduesCOP
 
typedef utility::pointer::shared_ptr< OperateOnResidueSubsetOperateOnResidueSubsetOP
 
typedef utility::pointer::shared_ptr< OperateOnResidueSubsetOperateOnResidueSubsetCOP
 
typedef utility::pointer::shared_ptr< OptCysHGOptCysHGOP
 OptCysHG owning pointer. More...
 
typedef utility::pointer::shared_ptr< OptCysHG const > OptCysHGCOP
 OptCysHG const owning pointer. More...
 
typedef utility::pointer::weak_ptr< OptCysHGOptCysHGAP
 OptCysHG owning pointer. More...
 
typedef utility::pointer::weak_ptr< OptCysHG const > OptCysHGCAP
 OptCysHG const owning pointer. More...
 
typedef utility::pointer::shared_ptr< OptHOptHOP
 OptH owning pointer. More...
 
typedef utility::pointer::shared_ptr< OptH const > OptHCOP
 OptH const owning pointer. More...
 
typedef utility::pointer::weak_ptr< OptHOptHAP
 OptH owning pointer. More...
 
typedef utility::pointer::weak_ptr< OptH const > OptHCAP
 OptH const owning pointer. More...
 
typedef utility::pointer::shared_ptr< ReplicateTaskReplicateTaskOP
 ReplicateTask owning pointer. More...
 
typedef utility::pointer::shared_ptr< ReplicateTask const > ReplicateTaskCOP
 ReplicateTask const owning pointer. More...
 
typedef utility::pointer::weak_ptr< ReplicateTaskReplicateTaskAP
 ReplicateTask owning pointer. More...
 
typedef utility::pointer::weak_ptr< ReplicateTask const > ReplicateTaskCAP
 ReplicateTask const owning pointer. More...
 
typedef utility::pointer::shared_ptr< ResFilterResFilterOP
 
typedef utility::pointer::shared_ptr< ResFilterResFilterCOP
 
typedef utility::pointer::shared_ptr< ResFilterCreatorResFilterCreatorOP
 
typedef utility::pointer::shared_ptr< ResFilterCreator const > ResFilterCreatorCOP
 
typedef utility::pointer::shared_ptr< ResFilterFactoryResFilterFactoryOP
 
typedef utility::pointer::shared_ptr< ResFilterFactory const > ResFilterFactoryCOP
 
typedef utility::pointer::shared_ptr< ResidueHasPropertyResidueHasPropertyOP
 
typedef utility::pointer::shared_ptr< ResiduePDBInfoHasLabelResiduePDBInfoHasLabelOP
 
typedef utility::pointer::shared_ptr< ResidueLacksPropertyResidueLacksPropertyOP
 
typedef utility::pointer::shared_ptr< ResidueName3IsResidueName3IsOP
 
typedef utility::pointer::shared_ptr< ResidueName3IsntResidueName3IsntOP
 
typedef utility::pointer::shared_ptr< ResidueIndexIsResidueIndexIsOP
 
typedef utility::pointer::shared_ptr< ResidueIndexIsntResidueIndexIsntOP
 
typedef utility::pointer::shared_ptr< ResiduePDBIndexIsResiduePDBIndexIsOP
 
typedef utility::pointer::shared_ptr< ResiduePDBIndexIsntResiduePDBIndexIsntOP
 
typedef utility::pointer::shared_ptr< ChainIsChainIsOP
 
typedef utility::pointer::shared_ptr< ChainIsntChainIsntOP
 
typedef utility::pointer::shared_ptr< ResLvlTaskOperationResLvlTaskOperationOP
 
typedef utility::pointer::shared_ptr< ResLvlTaskOperation const > ResLvlTaskOperationCOP
 
typedef utility::pointer::shared_ptr< ResLvlTaskOperationCreatorResLvlTaskOperationCreatorOP
 
typedef utility::pointer::shared_ptr< ResLvlTaskOperationCreator const > ResLvlTaskOperationCreatorCOP
 
typedef utility::pointer::shared_ptr< ResLvlTaskOperationFactoryResLvlTaskOperationFactoryOP
 
typedef utility::pointer::shared_ptr< ResLvlTaskOperationFactory const > ResLvlTaskOperationFactoryCOP
 
typedef utility::pointer::shared_ptr< RestrictToRepackingRLTRestrictToRepackingRLTOP
 
typedef utility::pointer::shared_ptr< RestrictAbsentCanonicalAASRLTRestrictAbsentCanonicalAASRLTOP
 
typedef utility::pointer::shared_ptr< DisallowIfNonnativeRLTDisallowIfNonnativeRLTOP
 
typedef utility::pointer::shared_ptr< PreventRepackingRLTPreventRepackingRLTOP
 
typedef utility::pointer::shared_ptr< AddBehaviorRLTAddBehaviorRLTOP
 
using RestrictInteractionGraphThreadsOperationOP = utility::pointer::shared_ptr< RestrictInteractionGraphThreadsOperation >
 
using RestrictInteractionGraphThreadsOperationCOP = utility::pointer::shared_ptr< RestrictInteractionGraphThreadsOperation const >
 
typedef utility::pointer::shared_ptr< TaskOperationTaskOperationOP
 
typedef utility::pointer::shared_ptr< TaskOperationTaskOperationCOP
 
typedef utility::pointer::shared_ptr< TaskOperationCreatorTaskOperationCreatorOP
 
typedef utility::pointer::shared_ptr< TaskOperationCreator const > TaskOperationCreatorCOP
 
typedef utility::pointer::shared_ptr< TaskOperationFactoryTaskOperationFactoryOP
 
typedef utility::pointer::shared_ptr< TaskOperationFactory const > TaskOperationFactoryCOP
 
typedef utility::pointer::shared_ptr< AppendResidueRotamerSetAppendResidueRotamerSetOP
 
typedef utility::pointer::shared_ptr< AppendRotamerAppendRotamerOP
 
typedef utility::pointer::shared_ptr< AppendRotamerSetAppendRotamerSetOP
 
typedef utility::pointer::shared_ptr< DisallowIfNonnativeDisallowIfNonnativeOP
 
typedef utility::pointer::shared_ptr< ExtraChiCutoffExtraChiCutoffOP
 
typedef utility::pointer::shared_ptr< ExtraRotamersExtraRotamersOP
 
typedef utility::pointer::shared_ptr< ExtraRotamersGenericExtraRotamersGenericOP
 
typedef utility::pointer::shared_ptr< IncludeCurrentIncludeCurrentOP
 
typedef utility::pointer::shared_ptr< InitializeExtraRotsFromCommandlineInitializeExtraRotsFromCommandlineOP
 
typedef utility::pointer::shared_ptr< InitializeFromCommandlineInitializeFromCommandlineOP
 
typedef utility::pointer::shared_ptr< UseMultiCoolAnnealerUseMultiCoolAnnealerOP
 
typedef utility::pointer::shared_ptr< PreserveCBetaPreserveCBetaOP
 
typedef utility::pointer::shared_ptr< PreventRepackingPreventRepackingOP
 
typedef utility::pointer::shared_ptr< ProhibitResiduePropertiesProhibitResiduePropertiesOP
 
typedef utility::pointer::shared_ptr< ProhibitSpecifiedBaseResidueTypesProhibitSpecifiedBaseResidueTypesOP
 
typedef utility::pointer::shared_ptr< ReadResfileReadResfileOP
 
typedef utility::pointer::shared_ptr< ReadResfileAndObeyLengthEventsReadResfileAndObeyLengthEventsOP
 
typedef utility::pointer::shared_ptr< RestrictAbsentCanonicalAASRestrictAbsentCanonicalAASOP
 
typedef utility::pointer::shared_ptr< RestrictResidueToRepackingRestrictResidueToRepackingOP
 
typedef utility::pointer::shared_ptr< RestrictToRepackingRestrictToRepackingOP
 
typedef utility::pointer::shared_ptr< RestrictToResiduePropertiesRestrictToResiduePropertiesOP
 
typedef utility::pointer::shared_ptr< RestrictToSpecifiedBaseResidueTypesRestrictToSpecifiedBaseResidueTypesOP
 
typedef utility::pointer::shared_ptr< RestrictYSDesignRestrictYSDesignOP
 
typedef utility::pointer::shared_ptr< RotamerExplosionRotamerExplosionOP
 
typedef utility::pointer::shared_ptr< SetRotamerCouplingsSetRotamerCouplingsOP
 
typedef utility::pointer::shared_ptr< SetRotamerLinksSetRotamerLinksOP
 

Functions

static basic::Tracer TR ("core.pack.task.operation.ClashBasedRepackShell")
 
static basic::Tracer TR ("core.pack.task.operation.NoRepackDisulfides")
 
static basic::Tracer TR ("core.pack.task.operation.OperateOnCertainResidues", t_info)
 
static basic::Tracer TR ("core.pack.task.operation.OperateOnResidueSubset", t_info)
 
std::string const & rlto_datamap_category ()
 
void parse_residue_level_task_operations (utility::tag::TagCOP const &tag, basic::datacache::DataMap &dm, std::list< core::pack::task::operation::ResLvlTaskOperationOP > &rltos)
 
void parse_residue_level_task_operations (utility::tag::TagCOP const &tag, basic::datacache::DataMap &dm, std::list< core::pack::task::operation::ResLvlTaskOperationCOP > &rltos)
 
void attributes_for_parse_residue_level_operations (utility::tag::AttributeList &attributes)
 
static basic::Tracer TR ("core.pack.task.operation.ResFilters")
 
static basic::Tracer TR ("core.pack.task.operation.ResLvlTaskOperations", basic::t_info)
 
std::string complex_type_name_for_task_op (std::string const &task_op_name)
 
std::string complex_type_name_for_res_lvl_task_op (std::string const &task_op_name)
 
std::string complex_type_name_for_res_filter (std::string const &res_filter_name)
 
void task_op_schema_empty (utility::tag::XMLSchemaDefinition &xsd, std::string const &task_op_name, std::string const &description)
 
void task_op_schema_w_attributes (utility::tag::XMLSchemaDefinition &xsd, std::string const &task_op_name, utility::tag::AttributeList const &attributes, std::string const &description)
 
void res_lvl_task_op_schema_empty (utility::tag::XMLSchemaDefinition &xsd, std::string const &task_op_name, std::string const &description)
 
void res_lvl_task_op_schema_w_attributes (utility::tag::XMLSchemaDefinition &xsd, std::string const &task_op_name, utility::tag::AttributeList const &attributes, std::string const &description)
 
void res_filter_schema_w_attributes (utility::tag::XMLSchemaDefinition &xsd, std::string const &res_filter_name, utility::tag::AttributeList const &attributes, std::string const &description)
 
static basic::Tracer TR ("core.pack.task.operation.TaskOperation")
 
static basic::Tracer TR ("core.pack.task.operation.TaskOperationFactory")
 
static basic::Tracer TR ("core.pack.task.operation.TaskOperations", basic::t_info)
 
void parse_rotamer_sampling_data (utility::tag::TagCOP tag, ExtraRotamerSamplingData &sampling_data)
 Initialize rotamer sampling data based on the options (attributes) in an input Tag. More...
 
void define_extra_rotamers_sampling_level_restriction (utility::tag::XMLSchemaDefinition &xsd)
 
AttributeList rotamer_sampling_data_xml_schema_attributes (XMLSchemaDefinition &xsd)
 
void set_rotamer_sampling_data_for_RLT (ExtraRotamerSamplingData const &sampling_data, ResidueLevelTask &res_task)
 
utility::tag::AttributeList rotamer_sampling_data_xml_schema_attributes (utility::tag::XMLSchemaDefinition &xsd)
 Return the list of XML schema attributes that are read by the parse_rotamer_sampling_data function. More...
 

Typedef Documentation

◆ AddBehaviorRLTOP

typedef utility::pointer::shared_ptr< AddBehaviorRLT > core::pack::task::operation::AddBehaviorRLTOP

◆ AppendResidueRotamerSetOP

◆ AppendRotamerOP

typedef utility::pointer::shared_ptr< AppendRotamer > core::pack::task::operation::AppendRotamerOP

◆ AppendRotamerSetOP

typedef utility::pointer::shared_ptr< AppendRotamerSet > core::pack::task::operation::AppendRotamerSetOP

◆ ChainIsntOP

typedef utility::pointer::shared_ptr< ChainIsnt > core::pack::task::operation::ChainIsntOP

◆ ChainIsOP

typedef utility::pointer::shared_ptr< ChainIs > core::pack::task::operation::ChainIsOP

◆ ClashBasedRepackShellAP

ClashBasedRepackShell owning pointer.

◆ ClashBasedRepackShellCAP

ClashBasedRepackShell const owning pointer.

◆ ClashBasedRepackShellCOP

ClashBasedRepackShell const owning pointer.

◆ ClashBasedRepackShellOP

ClashBasedRepackShell owning pointer.

◆ DesignRestrictionsCOP

typedef utility::pointer::shared_ptr< DesignRestrictions const > core::pack::task::operation::DesignRestrictionsCOP

◆ DesignRestrictionsOP

◆ DisallowIfNonnativeOP

◆ DisallowIfNonnativeRLTOP

◆ EnableMultiCoolAnnealerCOP

◆ EnableMultiCoolAnnealerOP

◆ EnableSmartAnnealerCOP

using core::pack::task::operation::EnableSmartAnnealerCOP = typedef utility::pointer::shared_ptr< EnableSmartAnnealer const >

◆ EnableSmartAnnealerOP

using core::pack::task::operation::EnableSmartAnnealerOP = typedef utility::pointer::shared_ptr< EnableSmartAnnealer >

◆ ExtraChiCutoffOP

typedef utility::pointer::shared_ptr< ExtraChiCutoff > core::pack::task::operation::ExtraChiCutoffOP

◆ ExtraRotamersGenericOP

◆ ExtraRotamersOP

typedef utility::pointer::shared_ptr< ExtraRotamers > core::pack::task::operation::ExtraRotamersOP

◆ FillAUTOTaskOperationCOP

◆ FillAUTOTaskOperationOP

◆ IncludeCurrentOP

typedef utility::pointer::shared_ptr< IncludeCurrent > core::pack::task::operation::IncludeCurrentOP

◆ InitializeExtraRotsFromCommandlineOP

◆ InitializeFromCommandlineOP

◆ KeepSequenceSymmetryCOP

using core::pack::task::operation::KeepSequenceSymmetryCOP = typedef utility::pointer::shared_ptr< KeepSequenceSymmetry const >

◆ KeepSequenceSymmetryOP

using core::pack::task::operation::KeepSequenceSymmetryOP = typedef utility::pointer::shared_ptr< KeepSequenceSymmetry >

◆ NoRepackDisulfidesAP

NoRepackDisulfides owning pointer.

◆ NoRepackDisulfidesCAP

typedef utility::pointer::weak_ptr< NoRepackDisulfides const > core::pack::task::operation::NoRepackDisulfidesCAP

NoRepackDisulfides const owning pointer.

◆ NoRepackDisulfidesCOP

typedef utility::pointer::shared_ptr< NoRepackDisulfides const > core::pack::task::operation::NoRepackDisulfidesCOP

NoRepackDisulfides const owning pointer.

◆ NoRepackDisulfidesOP

NoRepackDisulfides owning pointer.

◆ OperateOnCertainResiduesCOP

◆ OperateOnCertainResiduesOP

◆ OperateOnResidueSubsetCOP

◆ OperateOnResidueSubsetOP

◆ OptCysHGAP

typedef utility::pointer::weak_ptr< OptCysHG > core::pack::task::operation::OptCysHGAP

OptCysHG owning pointer.

◆ OptCysHGCAP

typedef utility::pointer::weak_ptr< OptCysHG const > core::pack::task::operation::OptCysHGCAP

OptCysHG const owning pointer.

◆ OptCysHGCOP

typedef utility::pointer::shared_ptr< OptCysHG const > core::pack::task::operation::OptCysHGCOP

OptCysHG const owning pointer.

◆ OptCysHGOP

typedef utility::pointer::shared_ptr< OptCysHG > core::pack::task::operation::OptCysHGOP

OptCysHG owning pointer.

◆ OptHAP

typedef utility::pointer::weak_ptr< OptH > core::pack::task::operation::OptHAP

OptH owning pointer.

◆ OptHCAP

typedef utility::pointer::weak_ptr< OptH const > core::pack::task::operation::OptHCAP

OptH const owning pointer.

◆ OptHCOP

typedef utility::pointer::shared_ptr< OptH const > core::pack::task::operation::OptHCOP

OptH const owning pointer.

◆ OptHOP

typedef utility::pointer::shared_ptr< OptH > core::pack::task::operation::OptHOP

OptH owning pointer.

◆ PreserveCBetaOP

typedef utility::pointer::shared_ptr< PreserveCBeta > core::pack::task::operation::PreserveCBetaOP

◆ PreventRepackingOP

typedef utility::pointer::shared_ptr< PreventRepacking > core::pack::task::operation::PreventRepackingOP

◆ PreventRepackingRLTOP

◆ ProhibitResiduePropertiesOP

◆ ProhibitSpecifiedBaseResidueTypesOP

◆ ReadResfileAndObeyLengthEventsOP

◆ ReadResfileOP

typedef utility::pointer::shared_ptr< ReadResfile > core::pack::task::operation::ReadResfileOP

◆ ReplicateTaskAP

typedef utility::pointer::weak_ptr< ReplicateTask > core::pack::task::operation::ReplicateTaskAP

ReplicateTask owning pointer.

◆ ReplicateTaskCAP

typedef utility::pointer::weak_ptr< ReplicateTask const > core::pack::task::operation::ReplicateTaskCAP

ReplicateTask const owning pointer.

◆ ReplicateTaskCOP

typedef utility::pointer::shared_ptr< ReplicateTask const > core::pack::task::operation::ReplicateTaskCOP

ReplicateTask const owning pointer.

◆ ReplicateTaskOP

typedef utility::pointer::shared_ptr< ReplicateTask > core::pack::task::operation::ReplicateTaskOP

ReplicateTask owning pointer.

◆ ResFilterCOP

typedef utility::pointer::shared_ptr< ResFilter > core::pack::task::operation::ResFilterCOP

◆ ResFilterCreatorCOP

typedef utility::pointer::shared_ptr< ResFilterCreator const > core::pack::task::operation::ResFilterCreatorCOP

◆ ResFilterCreatorOP

typedef utility::pointer::shared_ptr< ResFilterCreator > core::pack::task::operation::ResFilterCreatorOP

◆ ResFilterFactoryCOP

typedef utility::pointer::shared_ptr< ResFilterFactory const > core::pack::task::operation::ResFilterFactoryCOP

◆ ResFilterFactoryOP

typedef utility::pointer::shared_ptr< ResFilterFactory > core::pack::task::operation::ResFilterFactoryOP

◆ ResFilterOP

typedef utility::pointer::shared_ptr< ResFilter > core::pack::task::operation::ResFilterOP

◆ ResidueHasPropertyOP

◆ ResidueIndexIsntOP

typedef utility::pointer::shared_ptr< ResidueIndexIsnt > core::pack::task::operation::ResidueIndexIsntOP

◆ ResidueIndexIsOP

typedef utility::pointer::shared_ptr< ResidueIndexIs > core::pack::task::operation::ResidueIndexIsOP

◆ ResidueLacksPropertyOP

◆ ResidueName3IsntOP

typedef utility::pointer::shared_ptr< ResidueName3Isnt > core::pack::task::operation::ResidueName3IsntOP

◆ ResidueName3IsOP

typedef utility::pointer::shared_ptr< ResidueName3Is > core::pack::task::operation::ResidueName3IsOP

◆ ResiduePDBIndexIsntOP

◆ ResiduePDBIndexIsOP

◆ ResiduePDBInfoHasLabelOP

◆ ResLvlTaskOperationCOP

typedef utility::pointer::shared_ptr< ResLvlTaskOperation const > core::pack::task::operation::ResLvlTaskOperationCOP

◆ ResLvlTaskOperationCreatorCOP

◆ ResLvlTaskOperationCreatorOP

◆ ResLvlTaskOperationFactoryCOP

◆ ResLvlTaskOperationFactoryOP

◆ ResLvlTaskOperationOP

◆ RestrictAbsentCanonicalAASOP

◆ RestrictAbsentCanonicalAASRLTOP

◆ RestrictInteractionGraphThreadsOperationCOP

◆ RestrictInteractionGraphThreadsOperationOP

◆ RestrictResidueToRepackingOP

◆ RestrictToRepackingOP

◆ RestrictToRepackingRLTOP

◆ RestrictToResiduePropertiesOP

◆ RestrictToSpecifiedBaseResidueTypesOP

◆ RestrictYSDesignOP

typedef utility::pointer::shared_ptr< RestrictYSDesign > core::pack::task::operation::RestrictYSDesignOP

◆ RotamerExplosionOP

typedef utility::pointer::shared_ptr< RotamerExplosion > core::pack::task::operation::RotamerExplosionOP

◆ SetRotamerCouplingsOP

◆ SetRotamerLinksOP

typedef utility::pointer::shared_ptr< SetRotamerLinks > core::pack::task::operation::SetRotamerLinksOP

◆ TaskOperationCOP

typedef utility::pointer::shared_ptr< TaskOperation > core::pack::task::operation::TaskOperationCOP

◆ TaskOperationCreatorCOP

typedef utility::pointer::shared_ptr< TaskOperationCreator const > core::pack::task::operation::TaskOperationCreatorCOP

◆ TaskOperationCreatorOP

◆ TaskOperationFactoryCOP

typedef utility::pointer::shared_ptr< TaskOperationFactory const > core::pack::task::operation::TaskOperationFactoryCOP

◆ TaskOperationFactoryOP

◆ TaskOperationOP

typedef utility::pointer::shared_ptr< TaskOperation > core::pack::task::operation::TaskOperationOP

◆ UseMultiCoolAnnealerOP

Function Documentation

◆ attributes_for_parse_residue_level_operations()

void core::pack::task::operation::attributes_for_parse_residue_level_operations ( utility::tag::AttributeList &  attributes)

◆ complex_type_name_for_res_filter()

std::string core::pack::task::operation::complex_type_name_for_res_filter ( std::string const &  res_filter_name)

◆ complex_type_name_for_res_lvl_task_op()

std::string core::pack::task::operation::complex_type_name_for_res_lvl_task_op ( std::string const &  task_op_name)

◆ complex_type_name_for_task_op()

std::string core::pack::task::operation::complex_type_name_for_task_op ( std::string const &  task_op_name)

◆ define_extra_rotamers_sampling_level_restriction()

void core::pack::task::operation::define_extra_rotamers_sampling_level_restriction ( utility::tag::XMLSchemaDefinition &  xsd)

◆ parse_residue_level_task_operations() [1/2]

void core::pack::task::operation::parse_residue_level_task_operations ( utility::tag::TagCOP const &  tag,
basic::datacache::DataMap dm,
std::list< core::pack::task::operation::ResLvlTaskOperationCOP > &  rltos 
)

◆ parse_residue_level_task_operations() [2/2]

void core::pack::task::operation::parse_residue_level_task_operations ( utility::tag::TagCOP const &  tag,
basic::datacache::DataMap dm,
std::list< core::pack::task::operation::ResLvlTaskOperationOP > &  rltos 
)

◆ parse_rotamer_sampling_data()

void core::pack::task::operation::parse_rotamer_sampling_data ( utility::tag::TagCOP  tag,
ExtraRotamerSamplingData sampling_data 
)

Initialize rotamer sampling data based on the options (attributes) in an input Tag.

References core::pack::task::operation::ExtraRotamerSamplingData::ex1_, core::pack::task::operation::ExtraRotamerSamplingData::ex1_sample_level_, core::pack::task::operation::ExtraRotamerSamplingData::ex1aro_, core::pack::task::operation::ExtraRotamerSamplingData::ex1aro_exposed_, core::pack::task::operation::ExtraRotamerSamplingData::ex1aro_exposed_sample_level_, core::pack::task::operation::ExtraRotamerSamplingData::ex1aro_sample_level_, core::pack::task::operation::ExtraRotamerSamplingData::ex2_, core::pack::task::operation::ExtraRotamerSamplingData::ex2_sample_level_, core::pack::task::operation::ExtraRotamerSamplingData::ex2aro_, core::pack::task::operation::ExtraRotamerSamplingData::ex2aro_exposed_, core::pack::task::operation::ExtraRotamerSamplingData::ex2aro_exposed_sample_level_, core::pack::task::operation::ExtraRotamerSamplingData::ex2aro_sample_level_, core::pack::task::operation::ExtraRotamerSamplingData::ex3_, core::pack::task::operation::ExtraRotamerSamplingData::ex3_sample_level_, core::pack::task::operation::ExtraRotamerSamplingData::ex4_, core::pack::task::operation::ExtraRotamerSamplingData::ex4_sample_level_, core::pack::task::operation::ExtraRotamerSamplingData::exdna_sample_level_, core::pack::task::operation::ExtraRotamerSamplingData::extrachi_cutoff_, core::pack::task::EXTRACHI_CUTOFF_LIMIT, and core::pack::task::NO_EXTRA_CHI_SAMPLES.

Referenced by core::pack::task::operation::ExtraRotamersGenericRLT::parse_tag(), and core::pack::task::operation::ExtraRotamersGeneric::parse_tag().

◆ res_filter_schema_w_attributes()

void core::pack::task::operation::res_filter_schema_w_attributes ( utility::tag::XMLSchemaDefinition &  xsd,
std::string const &  res_filter_name,
utility::tag::AttributeList const &  attributes,
std::string const &  description 
)

◆ res_lvl_task_op_schema_empty()

void core::pack::task::operation::res_lvl_task_op_schema_empty ( utility::tag::XMLSchemaDefinition &  xsd,
std::string const &  task_op_name,
std::string const &  description 
)

◆ res_lvl_task_op_schema_w_attributes()

void core::pack::task::operation::res_lvl_task_op_schema_w_attributes ( utility::tag::XMLSchemaDefinition &  xsd,
std::string const &  task_op_name,
utility::tag::AttributeList const &  attributes,
std::string const &  description 
)

◆ rlto_datamap_category()

std::string const & core::pack::task::operation::rlto_datamap_category ( )

◆ rotamer_sampling_data_xml_schema_attributes() [1/2]

utility::tag::AttributeList core::pack::task::operation::rotamer_sampling_data_xml_schema_attributes ( utility::tag::XMLSchemaDefinition &  xsd)

Return the list of XML schema attributes that are read by the parse_rotamer_sampling_data function.

◆ rotamer_sampling_data_xml_schema_attributes() [2/2]

AttributeList core::pack::task::operation::rotamer_sampling_data_xml_schema_attributes ( XMLSchemaDefinition &  xsd)

◆ set_rotamer_sampling_data_for_RLT()

void core::pack::task::operation::set_rotamer_sampling_data_for_RLT ( ExtraRotamerSamplingData const &  sampling_data,
ResidueLevelTask res_task 
)

References core::pack::task::ResidueLevelTask::and_extrachi_cutoff(), core::pack::task::operation::ExtraRotamerSamplingData::ex1_, core::pack::task::operation::ExtraRotamerSamplingData::ex1_sample_level_, core::pack::task::operation::ExtraRotamerSamplingData::ex1aro_, core::pack::task::operation::ExtraRotamerSamplingData::ex1aro_exposed_, core::pack::task::operation::ExtraRotamerSamplingData::ex1aro_exposed_sample_level_, core::pack::task::operation::ExtraRotamerSamplingData::ex1aro_sample_level_, core::pack::task::operation::ExtraRotamerSamplingData::ex2_, core::pack::task::operation::ExtraRotamerSamplingData::ex2_sample_level_, core::pack::task::operation::ExtraRotamerSamplingData::ex2aro_, core::pack::task::operation::ExtraRotamerSamplingData::ex2aro_exposed_, core::pack::task::operation::ExtraRotamerSamplingData::ex2aro_exposed_sample_level_, core::pack::task::operation::ExtraRotamerSamplingData::ex2aro_sample_level_, core::pack::task::operation::ExtraRotamerSamplingData::ex3_, core::pack::task::operation::ExtraRotamerSamplingData::ex3_sample_level_, core::pack::task::operation::ExtraRotamerSamplingData::ex4_, core::pack::task::operation::ExtraRotamerSamplingData::ex4_sample_level_, core::pack::task::operation::ExtraRotamerSamplingData::exdna_sample_level_, core::pack::task::operation::ExtraRotamerSamplingData::extrachi_cutoff_, core::pack::task::ResidueLevelTask::or_ex1(), core::pack::task::ResidueLevelTask::or_ex1_sample_level(), core::pack::task::ResidueLevelTask::or_ex1aro(), core::pack::task::ResidueLevelTask::or_ex1aro_exposed(), core::pack::task::ResidueLevelTask::or_ex1aro_exposed_sample_level(), core::pack::task::ResidueLevelTask::or_ex1aro_sample_level(), core::pack::task::ResidueLevelTask::or_ex2(), core::pack::task::ResidueLevelTask::or_ex2_sample_level(), core::pack::task::ResidueLevelTask::or_ex2aro(), core::pack::task::ResidueLevelTask::or_ex2aro_exposed(), core::pack::task::ResidueLevelTask::or_ex2aro_exposed_sample_level(), core::pack::task::ResidueLevelTask::or_ex2aro_sample_level(), core::pack::task::ResidueLevelTask::or_ex3(), core::pack::task::ResidueLevelTask::or_ex3_sample_level(), core::pack::task::ResidueLevelTask::or_ex4(), core::pack::task::ResidueLevelTask::or_ex4_sample_level(), and core::pack::task::ResidueLevelTask::or_exdna_sample_level().

Referenced by core::pack::task::operation::ExtraRotamersGeneric::apply(), and core::pack::task::operation::ExtraRotamersGenericRLT::apply().

◆ task_op_schema_empty()

void core::pack::task::operation::task_op_schema_empty ( utility::tag::XMLSchemaDefinition &  xsd,
std::string const &  task_op_name,
std::string const &  description 
)

References complex_type_name_for_task_op().

Referenced by core::pack::task::operation::FillAUTOTaskOperation::provide_xml_schema(), core::pack::task::operation::NoRepackDisulfides::provide_xml_schema(), core::pack::task::operation::OptCysHG::provide_xml_schema(), core::pack::task::operation::OptH::provide_xml_schema(), core::pack::task::operation::RestrictToRepacking::provide_xml_schema(), core::pack::task::operation::InitializeFromCommandline::provide_xml_schema(), core::pack::task::operation::InitializeExtraRotsFromCommandline::provide_xml_schema(), core::pack::task::operation::IncludeCurrent::provide_xml_schema(), core::pack::task::operation::SetRotamerCouplings::provide_xml_schema(), core::pack::task::operation::SetRotamerLinks::provide_xml_schema(), core::pack::task::operation::AppendRotamer::provide_xml_schema(), core::pack::task::operation::AppendRotamerSet::provide_xml_schema(), core::pack::task::operation::AppendResidueRotamerSet::provide_xml_schema(), core::pack::task::operation::PreserveCBeta::provide_xml_schema(), core::pack::task::operation::RestrictYSDesign::provide_xml_schema(), protocols::dna::WatsonCrickRotamerCouplings::provide_xml_schema(), protocols::enzdes::AddRigidBodyLigandConfs::provide_xml_schema(), protocols::enzdes::AddLigandMotifRotamers::provide_xml_schema(), protocols::forge::remodel::RemodelRotamerLinks::provide_xml_schema(), protocols::hbnet::ConstrainHBondNetwork::provide_xml_schema(), protocols::simple_task_operations::InterfaceTaskOperation::provide_xml_schema(), protocols::simple_task_operations::DockingNoRepack1::provide_xml_schema(), protocols::simple_task_operations::DockingNoRepack2::provide_xml_schema(), protocols::task_operations::ImportUnboundRotamersOperation::provide_xml_schema(), protocols::task_operations::MutationSetDesignOperation::provide_xml_schema(), protocols::task_operations::RestrictByCalculatorsOperation::provide_xml_schema(), protocols::task_operations::RestrictInterGroupVectorOperation::provide_xml_schema(), protocols::task_operations::RestrictToCDRH3Loop::provide_xml_schema(), protocols::task_operations::RestrictToInterfaceOperation::provide_xml_schema(), protocols::task_operations::RestrictToMoveMapChiOperation::provide_xml_schema(), and protocols::task_operations::RestrictToNeighborhoodOperation::provide_xml_schema().

◆ task_op_schema_w_attributes()

void core::pack::task::operation::task_op_schema_w_attributes ( utility::tag::XMLSchemaDefinition &  xsd,
std::string const &  task_op_name,
utility::tag::AttributeList const &  attributes,
std::string const &  description 
)

References complex_type_name_for_task_op().

Referenced by core::pack::task::operation::ClashBasedRepackShell::provide_xml_schema(), core::pack::task::operation::EnableMultiCoolAnnealer::provide_xml_schema(), core::pack::task::operation::EnableSmartAnnealer::provide_xml_schema(), core::pack::task::operation::RestrictInteractionGraphThreadsOperation::provide_xml_schema(), core::pack::task::operation::RestrictToSpecifiedBaseResidueTypes::provide_xml_schema(), core::pack::task::operation::ProhibitSpecifiedBaseResidueTypes::provide_xml_schema(), core::pack::task::operation::RestrictToResidueProperties::provide_xml_schema(), core::pack::task::operation::ProhibitResidueProperties::provide_xml_schema(), core::pack::task::operation::RestrictResidueToRepacking::provide_xml_schema(), core::pack::task::operation::RestrictAbsentCanonicalAAS::provide_xml_schema(), core::pack::task::operation::DisallowIfNonnative::provide_xml_schema(), core::pack::task::operation::RotamerExplosion::provide_xml_schema(), core::pack::task::operation::UseMultiCoolAnnealer::provide_xml_schema(), core::pack::task::operation::InitializeFromOptionCollection::provide_xml_schema(), core::pack::task::operation::ExtraRotamersGeneric::provide_xml_schema(), core::pack::task::operation::ReadResfile::provide_xml_schema(), core::pack::task::operation::ReadResfileAndObeyLengthEvents::provide_xml_schema(), core::pack::task::operation::PreventRepacking::provide_xml_schema(), core::pack::task::operation::ExtraRotamers::provide_xml_schema(), core::pack::task::operation::ExtraChiCutoff::provide_xml_schema(), protocols::antibody::task_operations::AddCDRProfileSetsOperation::provide_xml_schema(), protocols::antibody::task_operations::AddCDRProfilesOperation::provide_xml_schema(), protocols::antibody::task_operations::DisableAntibodyRegionOperation::provide_xml_schema(), protocols::antibody::task_operations::DisableCDRsOperation::provide_xml_schema(), protocols::antibody::task_operations::RestrictToCDRsAndNeighbors::provide_xml_schema(), protocols::denovo_design::task_operations::ConsensusLoopDesignOperation::provide_xml_schema(), protocols::dna::RestrictDesignToProteinDNAInterface::provide_xml_schema(), protocols::enzdes::SetCatalyticResPackBehavior::provide_xml_schema(), protocols::enzdes::DetectProteinLigandInterface::provide_xml_schema(), protocols::enzdes::ProteinLigandInterfaceUpweighter::provide_xml_schema(), protocols::legacy_sewing::LegacyReadNativeRotamersFile::provide_xml_schema(), protocols::legacy_sewing::LegacyReadRepeatNativeRotamersFile::provide_xml_schema(), protocols::matdes::BuildingBlockInterfaceOperation::provide_xml_schema(), protocols::pack_interface::ProteinProteinInterfaceUpweighter::provide_xml_schema(), protocols::simple_task_operations::RestrictToInterface::provide_xml_schema(), protocols::simple_task_operations::RestrictToLoops::provide_xml_schema(), protocols::simple_task_operations::RestrictToLoopsAndNeighbors::provide_xml_schema(), protocols::splice::DesignInterfacesOperation::provide_xml_schema(), protocols::splice::FindEndpointsOperation::provide_xml_schema(), protocols::task_operations::AlignedThreadOperation::provide_xml_schema(), protocols::task_operations::ConservativeDesignOperation::provide_xml_schema(), protocols::task_operations::CrystalContactsOperation::provide_xml_schema(), protocols::task_operations::DatabaseThread::provide_xml_schema(), protocols::task_operations::DesignAroundOperation::provide_xml_schema(), protocols::task_operations::InteractingRotamerExplosion::provide_xml_schema(), protocols::task_operations::JointSequenceOperation::provide_xml_schema(), protocols::task_operations::LimitAromaChi2Operation::provide_xml_schema(), protocols::task_operations::ModifyAnnealer::provide_xml_schema(), protocols::task_operations::pHVariantTaskOperation::provide_xml_schema(), protocols::task_operations::PreventChainFromRepackingOperation::provide_xml_schema(), protocols::task_operations::PreventResiduesFromRepackingOperation::provide_xml_schema(), protocols::task_operations::ProteinInterfaceDesignOperation::provide_xml_schema(), protocols::task_operations::PruneBuriedUnsatsOperation::provide_xml_schema(), protocols::task_operations::ReadResfileFromDB::provide_xml_schema(), protocols::task_operations::ResfileCommandOperation::provide_xml_schema(), protocols::task_operations::ResidueProbDesignOperation::provide_xml_schema(), protocols::task_operations::RestrictChainToRepackingOperation::provide_xml_schema(), protocols::task_operations::RestrictIdentitiesAtAlignedPositionsOperation::provide_xml_schema(), protocols::task_operations::RestrictIdentitiesOperation::provide_xml_schema(), protocols::task_operations::RestrictNativeResiduesOperation::provide_xml_schema(), protocols::task_operations::RestrictNonSurfaceToRepackingOperation::provide_xml_schema(), protocols::task_operations::RestrictResiduesToRepackingOperation::provide_xml_schema(), protocols::task_operations::RestrictToInterfaceVectorOperation::provide_xml_schema(), protocols::task_operations::RestrictToTerminiOperation::provide_xml_schema(), protocols::task_operations::RetrieveStoredTaskOperation::provide_xml_schema(), protocols::task_operations::SelectByDeltaScoreOperation::provide_xml_schema(), protocols::task_operations::SelectByDensityFitOperation::provide_xml_schema(), protocols::task_operations::SelectBySASAOperation::provide_xml_schema(), protocols::task_operations::SelectResiduesWithinChainOperation::provide_xml_schema(), protocols::task_operations::SequenceMotifTaskOperation::provide_xml_schema(), protocols::task_operations::SetIGTypeOperation::provide_xml_schema(), and protocols::task_operations::ThreadSequenceOperation::provide_xml_schema().

◆ TR() [1/9]

static basic::Tracer core::pack::task::operation::TR ( "core.pack.task.operation.ClashBasedRepackShell"  )
static

◆ TR() [2/9]

static basic::Tracer core::pack::task::operation::TR ( "core.pack.task.operation.NoRepackDisulfides"  )
static

◆ TR() [3/9]

static basic::Tracer core::pack::task::operation::TR ( "core.pack.task.operation.OperateOnCertainResidues"  ,
t_info   
)
static

◆ TR() [4/9]

static basic::Tracer core::pack::task::operation::TR ( "core.pack.task.operation.OperateOnResidueSubset"  ,
t_info   
)
static

◆ TR() [5/9]

static basic::Tracer core::pack::task::operation::TR ( "core.pack.task.operation.ResFilters"  )
static

◆ TR() [6/9]

static basic::Tracer core::pack::task::operation::TR ( "core.pack.task.operation.ResLvlTaskOperations"  ,
basic::t_info   
)
static

◆ TR() [7/9]

static basic::Tracer core::pack::task::operation::TR ( "core.pack.task.operation.TaskOperation"  )
static

◆ TR() [8/9]

static basic::Tracer core::pack::task::operation::TR ( "core.pack.task.operation.TaskOperationFactory"  )
static

◆ TR() [9/9]

static basic::Tracer core::pack::task::operation::TR ( "core.pack.task.operation.TaskOperations"  ,
basic::t_info   
)
static