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GlycanSampler.cc File Reference

Main mover for Glycan Relax, which optimizes glycans in a pose. More...

#include <protocols/carbohydrates/GlycanSampler.hh>
#include <protocols/carbohydrates/GlycanSamplerCreator.hh>
#include <protocols/carbohydrates/LinkageConformerMover.hh>
#include <protocols/carbohydrates/GlycanTreeMinMover.hh>
#include <protocols/carbohydrates/util.hh>
#include <protocols/simple_moves/BBDihedralSamplerMover.hh>
#include <core/pose/Pose.hh>
#include <core/pose/carbohydrates/util.hh>
#include <core/pose/selection.hh>
#include <core/pose/util.hh>
#include <core/pose/extra_pose_info_util.hh>
#include <core/pose/symmetry/util.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/kinematics/util.hh>
#include <core/chemical/carbohydrates/CarbohydrateInfo.hh>
#include <core/pack/task/TaskFactory.hh>
#include <core/pack/task/operation/TaskOperations.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/util.hh>
#include <core/conformation/carbohydrates/GlycanTreeSet.hh>
#include <core/id/types.hh>
#include <core/pack/task/operation/OperateOnResidueSubset.hh>
#include <core/pack/task/operation/ResLvlTaskOperations.hh>
#include <core/select/residue_selector/NeighborhoodResidueSelector.hh>
#include <core/select/residue_selector/RandomGlycanFoliageSelector.hh>
#include <core/select/residue_selector/ReturnResidueSubsetSelector.hh>
#include <core/select/residue_selector/GlycanResidueSelector.hh>
#include <core/select/residue_selector/GlycanLayerSelector.hh>
#include <core/select/residue_selector/AndResidueSelector.hh>
#include <core/select/residue_selector/SymmetricalResidueSelector.hh>
#include <core/select/residue_selector/util.hh>
#include <core/select/util.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/select/residue_selector/ResidueSelector.hh>
#include <core/simple_metrics/metrics/TimingProfileMetric.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <protocols/moves/MoverContainer.hh>
#include <protocols/moves/PyMOLMover.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <protocols/simple_moves/bb_sampler/SugarBBSampler.hh>
#include <protocols/simple_moves/bb_sampler/SmallBBSampler.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <protocols/simple_moves/rational_mc/RationalMonteCarlo.hh>
#include <basic/Tracer.hh>
#include <utility/tag/Tag.hh>
#include <utility/string_util.hh>
#include <numeric/random/random.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/carbohydrates.OptionKeys.gen.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/citation_manager/CitationManager.hh>
#include <basic/citation_manager/CitationCollection.hh>
#include <basic/citation_manager/UnpublishedModuleInfo.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::carbohydrates
 

Functions

static basic::Tracer TR ("protocols.carbohydrates.GlycanSampler")
 
std::ostream & protocols::carbohydrates::operator<< (std::ostream &os, GlycanSampler const &mover)
 

Detailed Description

Main mover for Glycan Relax, which optimizes glycans in a pose.

Author
Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com) and Jason W. Labonte (JWLab.nosp@m.onte.nosp@m.@jhu..nosp@m.edu)

Function Documentation

static basic::Tracer TR ( "protocols.carbohydrates.GlycanSampler"  )
static