protocols::denovo_design::connection::AreConnectablePredicate Class Reference

#include <ConnectionArchitect.hh>

Public Types
typedef std::set< core::Size >	MovableGroupSet

Public Member Functions
	AreConnectablePredicate (bool const allow_cyclic)
virtual	~AreConnectablePredicate ()=default
virtual bool	operator() (components::StructureData const &sd, Motif const &motif) const
	checks whether two segments can be connected More...

Private Member Functions
bool	check_distance (components::StructureData const &sd, Motif const &motif) const
bool	check_movable_groups (components::StructureData const &sd, Motif const &motif) const
MovableGroupSet	connected_movable_groups (components::StructureData const &sd, std::string const &seg_name) const
	AreConnectablePredicate ()

Private Attributes
bool	allow_cyclic_

Member Typedef Documentation

MovableGroupSet

typedef std::set< core::Size > protocols::denovo_design::connection::AreConnectablePredicate::MovableGroupSet

Constructor & Destructor Documentation

AreConnectablePredicate() [1/2]

protocols::denovo_design::connection::AreConnectablePredicate::AreConnectablePredicate

(

bool const

allow_cyclic

)

~AreConnectablePredicate()

virtual protocols::denovo_design::connection::AreConnectablePredicate::~AreConnectablePredicate ( )

virtualdefault

AreConnectablePredicate() [2/2]

protocols::denovo_design::connection::AreConnectablePredicate::AreConnectablePredicate ( )

private

Member Function Documentation

check_distance()

bool protocols::denovo_design::connection::AreConnectablePredicate::check_distance ( components::StructureData const &  sd, Motif const &  motif  ) const

private

References protocols::denovo_design::components::Segment::abego(), protocols::denovo_design::components::StructureData::abego(), core::chemical::ResidueType::atom_name(), protocols::denovo_design::connection::calc_approx_loop_length(), protocols::denovo_design::components::Segment::cutpoint(), protocols::denovo_design::components::Segment::delete_lower_padding(), protocols::denovo_design::components::Segment::delete_upper_padding(), core::pose::get_restype_for_pose(), protocols::denovo_design::components::Segment::length(), core::chemical::ResidueType::lower_connect_atom(), protocols::denovo_design::components::Segment::lower_segment(), protocols::denovo_design::components::StructureData::segment(), protocols::denovo_design::components::Segment::start(), protocols::denovo_design::components::Segment::stop(), protocols::denovo_design::components::Segment::template_pose(), protocols::TR(), core::chemical::ResidueType::upper_connect_atom(), and protocols::denovo_design::components::Segment::upper_segment().

Referenced by operator()().

check_movable_groups()

bool protocols::denovo_design::connection::AreConnectablePredicate::check_movable_groups ( components::StructureData const &  sd, Motif const &  motif  ) const

private

References connected_movable_groups(), protocols::denovo_design::components::Segment::cutpoint(), protocols::denovo_design::components::Segment::lower_segment(), protocols::TR(), and protocols::denovo_design::components::Segment::upper_segment().

Referenced by operator()().

connected_movable_groups()

AreConnectablePredicate::MovableGroupSet protocols::denovo_design::connection::AreConnectablePredicate::connected_movable_groups ( components::StructureData const &  sd, std::string const &  seg_name  ) const

private

References protocols::denovo_design::components::StructureData::connected_segments(), protocols::denovo_design::components::Segment::movable_group(), and protocols::denovo_design::components::StructureData::segment().

Referenced by check_movable_groups().

operator()()

bool protocols::denovo_design::connection::AreConnectablePredicate::operator() ( components::StructureData const &  sd, Motif const &  motif  ) const

virtual

checks whether two segments can be connected

References allow_cyclic_, protocols::denovo_design::components::StructureData::available_lower_termini(), protocols::denovo_design::components::StructureData::available_upper_termini(), check_distance(), check_movable_groups(), protocols::denovo_design::components::Segment::has_free_lower_terminus(), protocols::denovo_design::components::Segment::has_free_upper_terminus(), protocols::denovo_design::components::Segment::lower_segment(), protocols::denovo_design::components::StructureData::segment(), protocols::denovo_design::components::StructureData::termini(), protocols::TR(), and protocols::denovo_design::components::Segment::upper_segment().

Member Data Documentation

allow_cyclic_

bool protocols::denovo_design::connection::AreConnectablePredicate::allow_cyclic_

private

Referenced by operator()().

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The documentation for this class was generated from the following files:

• src/protocols/denovo_design/connection/ConnectionArchitect.hh
• src/protocols/denovo_design/connection/ConnectionArchitect.cc