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protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased Member List

This is the complete list of members for protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased, including all inherited members.

auto_tune_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
calc_rms_res_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
check_for_closeness(core::pose::PoseOP const &pose_op)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
cluster()protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased
cluster_by_all_atom_rmsd_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
cluster_radius_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
cluster_rmsds_to_try_with_auto_tune_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
cluster_with_auto_tune()protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
clustered_pose_list()protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased
corresponding_atom_id_map_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
do_some_clustering()protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
force_align_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
get_pose_list()protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased
hit_score_cutoff_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
initialize_auto_tune_cluster_rmsds()protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
initialize_cluster_list()protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
initialize_corresponding_atom_id_map(core::pose::Pose const &pose)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
initialize_parameters_and_input()protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
initialized_atom_id_map_for_rmsd_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
input_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
max_decoys_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
num_pose_in_cluster_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
numbered_pdb_output_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
output_silent_file(std::string const &silent_file)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased
pose_output_list_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
recluster_current_pose_list()protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
rename_tags_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
rsd_set_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
rsd_type_set_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
score_diff_cut_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
score_min_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
score_min_defined_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
set_auto_tune(bool const auto_tune)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedinline
set_calc_rms_res(utility::vector1< core::Size > const &calc_rms_res)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased
set_cluster_by_all_atom_rmsd(core::Real const &setting)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedinline
set_cluster_radius(core::Real const &setting)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedinline
set_force_align(bool const force_align)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedinline
set_max_decoys(core::Size const &setting)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedinline
set_numbered_pdb_output(bool const numbered_pdb_output)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedinline
set_rename_tags(core::Real const &setting)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedinline
set_rsd_type_set(std::string const &setting)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedinline
set_score_diff_cut(core::Real const &setting)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedinline
set_silent_file_data(core::io::silent::SilentFileDataOP &sfd)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased
setup_silent_struct(core::Size const n)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
silent_file_data()protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased
silent_files_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
silent_struct_output_list()protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedinline
silent_struct_output_list_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
StepWiseLegacyClustererSilentBased(utility::vector1< std::string > const &silent_files_in)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased
StepWiseLegacyClustererSilentBased(std::string const &silent_file_in)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased
StepWiseLegacyClustererSilentBased(core::io::silent::SilentFileDataOP &sfd)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased
StepWiseLegacyClustererSilentBased(core::io::silent::SilentFileDataOP silent_file_data, utility::vector1< core::Size > const &moving_res_list, options::StepWiseModelerOptionsCOP options, bool const force_align)protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased
tag_output_list_protocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBasedprivate
~StepWiseLegacyClustererSilentBased() overrideprotocols::stepwise::modeler::align::StepWiseLegacyClustererSilentBased