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protocols::flexpack::interaction_graph::MinimalistFlexbbEdge Class Reference

#include <MinimalistFlexbbInteractionGraph.hh>

Inheritance diagram for protocols::flexpack::interaction_graph::MinimalistFlexbbEdge:
Inheritance graph

Public Types

typedef OTFFlexbbEdge parent
typedef core::Real Real
- Public Types inherited from protocols::flexpack::interaction_graph::OTFFlexbbEdge
typedef FlexbbEdge parent
typedef core::conformation::Residue Residue
typedef ObjexxFCL::FArray2D
< PackerEnergy
- Public Types inherited from protocols::flexpack::interaction_graph::FlexbbEdge
typedef core::PackerEnergy PackerEnergy
typedef core::Real Real
typedef core::Size Size

Public Member Functions

 MinimalistFlexbbEdge (MinimalistFlexbbInteractionGraph *owner, int node1, int node2)
 EDGE. More...
 ~MinimalistFlexbbEdge () override
void declare_energies_final () override
 Virtual functions from EdgeBase. More...
void prepare_for_simulated_annealing () override
void set_edge_weight (Real weight) override
PackerEnergy get_alt_stateE ()
void acknowledge_substitution (int node_changing_state)
void acknowledge_state_zeroed (int node_index)
unsigned int count_static_memory () const override
unsigned int count_dynamic_memory () const override
- Public Member Functions inherited from protocols::flexpack::interaction_graph::OTFFlexbbEdge
 OTFFlexbbEdge (OTFFlexbbInteractionGraph *owner, int node1, int node2)
 EDGE. More...
 ~OTFFlexbbEdge () override
PackerEnergy compute_samebbconf_alternate_state_energy_first_node ()
PackerEnergy compute_samebbconf_alternate_state_energy_second_node ()
PackerEnergy compute_altbbconf_alternate_state_energy ()
void otfedge_note_substitution_accepted ()
unsigned int count_dynamic_memory () const override
void set_ProCorrection_values (int node_not_necessarily_proline, int state, int other_bb, PackerEnergy bb_nonprobb_E, PackerEnergy bb_probb_E, PackerEnergy sc_nonprobb_E, PackerEnergy sc_probb_E)
void set_GlyCorrection_values (int node_not_necessarily_glycine, int state, int other_bb, PackerEnergy bb_nonglybb_E, PackerEnergy bb_glybb_E, PackerEnergy sc_nonglybb_E, PackerEnergy sc_glybb_E)
void prepare_for_simulated_annealing () override
void note_long_range_interactions_exist ()
void print_alt_energies () const
- Public Member Functions inherited from protocols::flexpack::interaction_graph::FlexbbEdge
 FlexbbEdge (FlexbbInteractionGraph *owner, int first_node_ind, int second_node_ind)
 ~FlexbbEdge () override
bool get_nodes_from_same_flexseg () const
void set_alt_state (int node_index, int new_state, FlexbbSparseMatrixIndex const &state_info)
 Called by FlexbbNode in prepare_for_bb_jump: Edges must know the alternate states that nodes are considering. Precondition: alt_state_ for a fixed node must match its cur_state_. More...
void acknowledge_partial_state_assignment (int node_index, int new_state, FlexbbSparseMatrixIndex const &state_info)
void note_state_substitution_accepted ()
 Copy alt data to current data after a state substitution. More...
void reset_alternate_states_for_uncommited_substitution ()
 After a rejected state substitution, the FlexbbNode will call this function to reset the alt_state data to establish the invariant that the alternate state held on the flexbb edges reflect the the current state of those nodes not considering a state substitution. More...
PackerEnergy cur_energy () const
PackerEnergy alt_energy () const
- Public Member Functions inherited from core::pack::interaction_graph::EdgeBase
virtual ~EdgeBase ()
 copy constructor, do not use More...
 EdgeBase (InteractionGraphBase *owner, int first_node_ind, int second_node_ind)
 main constructor for edge, no default nor copy constructors More...
int get_other_ind (int callers_index) const
 returns the index of the other node that the edge is incident upon More...
NodeBaseget_other_node (int callers_index) const
 returns a pointer to the other node that the edge is incident upon More...
int get_first_node_ind () const
 returns the index of the smaller-indexed node More...
int get_second_node_ind () const
 returns the index of the larger-indexed node More...
void set_pos_in_owners_list (std::list< EdgeBase * >::iterator edge_iterator)
 edge keeps iterator to its position in it's owner's edge list More...
void set_pos_in_node_edgevector (int callers_index, int position)
 edge keeps index it has in node_ind's edge vector More...
bool same_edge (int node1, int node2) const
 returns true if this edge connects nodes of index node1 and node2 the order of node1 and node2 is not important More...
Real edge_weight () const
bool marked_for_deletion () const
 Has this edge indicated that it can be deleted? More...
InteractionGraphBase const * get_owner () const
InteractionGraphBaseget_owner ()

Protected Member Functions

MinimalistFlexbbNode const * get_minimalistflexbb_node (int index) const
 Downcasts. More...
MinimalistFlexbbNodeget_minimalistflexbb_node (int index)
const * 
get_minimalistflexbbig_owner () const
MinimalistFlexbbInteractionGraphget_minimalistflexbbig_owner ()
- Protected Member Functions inherited from protocols::flexpack::interaction_graph::OTFFlexbbEdge
OTFFlexbbNode const * get_otfflexbb_node (int index) const
 Downcasts. More...
OTFFlexbbNodeget_otfflexbb_node (int index)
OTFFlexbbInteractionGraph const * get_otfflexbbig_owner () const
OTFFlexbbInteractionGraphget_otfflexbbig_owner ()
Residue const & alt_rot (int which_node) const
void zero_state_on_node (int which_node)
- Protected Member Functions inherited from protocols::flexpack::interaction_graph::FlexbbEdge
FlexbbNode const * get_flexbb_node (int index) const
FlexbbNodeget_flexbb_node (int index)
FlexbbInteractionGraph const * get_flexbbig_owner () const
FlexbbInteractionGraphget_flexbbig_owner ()
int num_bb (int node)
bool nodes_part_of_same_flexseg () const
bool nodes_considering_bb_move () const
void set_nodes_considering_bb_move (bool status)
int nodes_cur_state (int node) const
FlexbbSparseMatrixIndex const & nodes_cur_info (int node) const
int nodes_alt_state (int node) const
FlexbbSparseMatrixIndex const & nodes_alt_info (int node) const
bool alt_e_up_to_date () const
void set_nodes_cur_state (int node, int setting)
 Set the currently assigned state for a node; node == 0 || 1. More...
void set_nodes_cur_info (int node, FlexbbSparseMatrixIndex const &setting)
void set_nodes_alt_state (int node, int setting)
 Set the altnernate state being considered for a node; node == 0 || 1. More...
void set_nodes_alt_info (int node, FlexbbSparseMatrixIndex const &setting)
void set_cur_energy (PackerEnergy setting)
void set_alt_energy (PackerEnergy setting)
void copy_alternate_to_current ()
void set_node_state_to_zero (int which_node)
- Protected Member Functions inherited from core::pack::interaction_graph::EdgeBase
void mark_edge_for_deletion ()
 Mark this edge so that it can be deleted. More...
int get_node_index (int index) const
int get_num_states_for_node (int index) const
NodeBase const * get_node (int index) const
NodeBaseget_node (int index)
int get_edges_position_in_nodes_edge_vector (int index) const
int which_node (int node_index) const
 is a node the first or second node this edge is incident upon? More...
void edge_weight (Real)
 protected setter of the edge weight. To be called by derived classes after they have completed the conversion from the previous edge weighting to the new edge weighting. More...

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::MinimalistFlexbbEdge ( MinimalistFlexbbInteractionGraph owner,
int  node1,
int  node2 


Referenced by count_static_memory().

protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::~MinimalistFlexbbEdge ( )

Member Function Documentation

void protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::acknowledge_state_zeroed ( int  node_index)
void protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::acknowledge_substitution ( int  node_changing_state)
unsigned int protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::count_dynamic_memory ( ) const
unsigned int protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::count_static_memory ( ) const
void protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::declare_energies_final ( )

Virtual functions from EdgeBase.

Implements core::pack::interaction_graph::EdgeBase.

MinimalistFlexbbEdge::PackerEnergy protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::get_alt_stateE ( )
MinimalistFlexbbNode const * protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::get_minimalistflexbb_node ( int  index) const


Edge Downcasts.

References core::pack::interaction_graph::EdgeBase::get_node().

Referenced by acknowledge_substitution().

MinimalistFlexbbNode * protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::get_minimalistflexbb_node ( int  index)
MinimalistFlexbbInteractionGraph const * protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::get_minimalistflexbbig_owner ( ) const
MinimalistFlexbbInteractionGraph * protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::get_minimalistflexbbig_owner ( )
void protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::prepare_for_simulated_annealing ( )
void protocols::flexpack::interaction_graph::MinimalistFlexbbEdge::set_edge_weight ( Real  weight)

The documentation for this class was generated from the following files: