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protocols::protein_interface_design::movers::SecretionOptimizationMover Member List

This is the complete list of members for protocols::protein_interface_design::movers::SecretionOptimizationMover, including all inherited members.

apply(Pose &) overrideprotocols::protein_interface_design::movers::SecretionOptimizationMovervirtual
chain_to_degrease_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::protein_interface_design::movers::SecretionOptimizationMovervirtual
coeffsprotocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
create()protocols::moves::Movervirtual
current_job_protocols::moves::Moverprivate
current_tag_protocols::moves::Moverprivate
DesignAroundApply(core::pose::Pose const &pose, utility::vector1< SecretionOptimizationMover::mutt > &targets) constprotocols::protein_interface_design::movers::SecretionOptimizationMover
dG_ins_for_window(std::string &window)protocols::protein_interface_design::movers::SecretionOptimizationMover
dG_ins_threshold_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
dG_term_for_residue_at_position(double &position, std::string &residue)protocols::protein_interface_design::movers::SecretionOptimizationMover
dG_tolerance_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
dump_dir_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
dump_multis_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
dump_singles_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
find_tm_regions(std::ostream &out, Pose &pose)protocols::protein_interface_design::movers::SecretionOptimizationMover
found_regions_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
fresh_instance() const overrideprotocols::protein_interface_design::movers::SecretionOptimizationMovervirtual
get_aas_allowed()protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
get_additional_output()protocols::moves::Movervirtual
get_chain_to_degrease()protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
get_current_job() constprotocols::moves::Mover
get_current_tag() constprotocols::moves::Moverinline
get_dG_ins_threshold()protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
get_dG_tolerance()protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
get_dump_dir()protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
get_dump_multis()protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
get_dump_singles()protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
get_input_pose() constprotocols::moves::Mover
get_last_move_status() constprotocols::moves::Mover
get_max_mutations()protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
get_name() const overrideprotocols::protein_interface_design::movers::SecretionOptimizationMovervirtual
get_native_pose() constprotocols::moves::Mover
get_score_tolerance()protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
get_self_ptr() constprotocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() constprotocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() constprotocols::moves::Moverinline
get_window_at_index(Pose &pose, core::Size &wlen, core::Size &start)protocols::protein_interface_design::movers::SecretionOptimizationMover
info()protocols::moves::Moverinlinevirtual
info() constprotocols::moves::Moverinlinevirtual
info_protocols::moves::Moverprivate
input_pose_protocols::moves::Moverprivate
keep_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
largest_ddg()protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
largest_ddg_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
last_status_protocols::moves::Moverprivate
make_table()protocols::protein_interface_design::movers::SecretionOptimizationMover
max_mutations_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
mover_name()protocols::protein_interface_design::movers::SecretionOptimizationMoverstatic
mutids_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
name()protocols::moves::Moverinlinestatic
native_pose_protocols::moves::Moverprivate
normalize_position_in_helix_given_length(core::Size &position, double &helix_length)protocols::protein_interface_design::movers::SecretionOptimizationMover
pack_it_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
packeruser(core::pose::Pose &pose) constprotocols::protein_interface_design::movers::SecretionOptimizationMover
parse_my_tag(utility::tag::TagCOP, basic::datacache::DataMap &) overrideprotocols::protein_interface_design::movers::SecretionOptimizationMovervirtual
Pose typedefprotocols::protein_interface_design::movers::SecretionOptimizationMover
PoseCOP typedefprotocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) constprotocols::moves::Movervirtual
provide_xml_schema(utility::tag::XMLSchemaDefinition &xsd)protocols::protein_interface_design::movers::SecretionOptimizationMoverstatic
Real typedefprotocols::protein_interface_design::movers::SecretionOptimizationMover
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() constprotocols::moves::Movervirtual
reinitialize_for_new_input() constprotocols::moves::Movervirtual
repack_shell() constprotocols::protein_interface_design::movers::SecretionOptimizationMoverinline
repack_shell(Real const repack_shell)protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
repack_shell_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
repack_shell_squared_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
report_test(std::ostream &out, Pose &pose)protocols::protein_interface_design::movers::SecretionOptimizationMovervirtual
reset_status()protocols::moves::Mover
resids_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
score_tolerance_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
scorefxn_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
ScoreType typedefprotocols::protein_interface_design::movers::SecretionOptimizationMover
SecretionOptimizationMover()protocols::protein_interface_design::movers::SecretionOptimizationMover
SecretionOptimizationMover(core::scoring::ScoreFunctionCOP scorefxn)protocols::protein_interface_design::movers::SecretionOptimizationMover
set_aas_allowed(std::string const aas_allowed)protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
set_chain_to_degrease(std::string const chain_to_degrease)protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_dG_ins_threshold(core::Real const dG_ins_threshold)protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
set_dG_tolerance(core::Real const dG_tolerance)protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
set_dump_dir(std::string const dump_dir)protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
set_dump_multis(bool dump_multis)protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
set_dump_singles(bool dump_singles)protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_max_mutations(core::Size const max_mutations)protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_score_tolerance(core::Real const score_tolerance)protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
set_type(std::string const &setting)protocols::moves::Moverinline
show(std::ostream &output=std::cout) constprotocols::moves::Movervirtual
smallest_dscore()protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
smallest_dscore_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
task_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
task_factory(core::pack::task::TaskFactoryCOP task_factory)protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
task_factory() constprotocols::protein_interface_design::movers::SecretionOptimizationMoverinline
task_factory_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
test_move(core::pose::Pose &pose) overrideprotocols::protein_interface_design::movers::SecretionOptimizationMovervirtual
type(const std::string &type_in)protocols::moves::Moverinline
type() constprotocols::moves::Moverinline
type_protocols::moves::Moverprivate
use_largest_ddg(bool largest_ddg)protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
use_smallest_dscore(bool smallest_dscore)protocols::protein_interface_design::movers::SecretionOptimizationMoverinline
window_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
window_size_protocols::protein_interface_design::movers::SecretionOptimizationMoverprivate
~SecretionOptimizationMover() overrideprotocols::protein_interface_design::movers::SecretionOptimizationMover