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protocols::stepwise::monte_carlo Namespace Reference

Namespaces

 mover
 
 options
 
 rna
 
 submotif
 

Classes

class  StepWiseMonteCarlo
 

Typedefs

typedef
utility::pointer::shared_ptr
< StepWiseMonteCarlo
StepWiseMonteCarloOP
 
typedef
utility::pointer::shared_ptr
< StepWiseMonteCarlo const > 
StepWiseMonteCarloCOP
 

Functions

void output_to_silent_file (std::string const &out_tag, std::string const &silent_file, pose::Pose &pose, pose::PoseCOP native_pose, bool const superimpose_over_all_instantiated, bool const do_rms_fill_calculation)
 
core::io::silent::SilentStructOP prepare_silent_struct (std::string const &out_tag, pose::Pose &pose, pose::PoseCOP native_pose, bool const superimpose_over_all_instantiated, bool const do_rms_fill_calculation, core::pose::PoseOP full_model_pose)
 
void output_to_silent_file (std::string const &out_tag, std::string const &silent_file, pose::Pose const &pose)
 
void output_to_silent_file (std::string const &silent_file, utility::vector1< pose::PoseOP > &pose_list, pose::PoseCOP native_pose)
 
void build_full_model (pose::Pose const &start_pose, pose::Pose &full_model_pose, bool const &enumerate, Real const &skip_bulge_freq)
 
core::pose::PoseOP build_full_model (pose::Pose const &start_pose)
 
std::string get_move_type_string (mover::StepWiseMove const &swa_move)
 
std::string get_all_res_list (pose::Pose &pose)
 
void output_to_silent_file (std::string const &silent_file, utility::vector1< core::pose::PoseOP > &pose_list, core::pose::PoseCOP native_pose)
 

Typedef Documentation

typedef utility::pointer::shared_ptr< StepWiseMonteCarlo const > protocols::stepwise::monte_carlo::StepWiseMonteCarloCOP

Function Documentation

void protocols::stepwise::monte_carlo::build_full_model ( pose::Pose const &  start_pose,
pose::Pose full_model_pose,
bool const &  enumerate,
Real const &  skip_bulge_freq 
)
core::pose::PoseOP protocols::stepwise::monte_carlo::build_full_model ( pose::Pose const &  start_pose)

Referenced by prepare_silent_struct().

std::string protocols::stepwise::monte_carlo::get_all_res_list ( pose::Pose pose)
std::string protocols::stepwise::monte_carlo::get_move_type_string ( mover::StepWiseMove const &  swa_move)
void protocols::stepwise::monte_carlo::output_to_silent_file ( std::string const &  silent_file,
utility::vector1< core::pose::PoseOP > &  pose_list,
core::pose::PoseCOP  native_pose 
)
void protocols::stepwise::monte_carlo::output_to_silent_file ( std::string const &  out_tag,
std::string const &  silent_file,
pose::Pose pose,
pose::PoseCOP  native_pose,
bool const  superimpose_over_all_instantiated,
bool const  do_rms_fill_calculation 
)
void protocols::stepwise::monte_carlo::output_to_silent_file ( std::string const &  out_tag,
std::string const &  silent_file,
pose::Pose const &  pose 
)
void protocols::stepwise::monte_carlo::output_to_silent_file ( std::string const &  silent_file,
utility::vector1< pose::PoseOP > &  pose_list,
pose::PoseCOP  native_pose 
)
core::io::silent::SilentStructOP protocols::stepwise::monte_carlo::prepare_silent_struct ( std::string const &  out_tag,
pose::Pose pose,
pose::PoseCOP  native_pose,
bool const  superimpose_over_all_instantiated,
bool const  do_rms_fill_calculation,
core::pose::PoseOP  full_model_pose 
)