Rosetta: protocols::hotspot_hashing::StubGenerator Class Reference

Rosetta

#include <StubGenerator.hh>

Public Types
typedef numeric::xyzMatrix< core::Real >	Matrix

typedef numeric::xyzVector< core::Real >	Vector

Static Public Member Functions
static core::conformation::ResidueOP	getStubByName (std::string name)

static void	placeResidueAtTransform (core::pose::Pose &pose, core::conformation::ResidueCOP sourceResidue, core::kinematics::Stub transform, core::Size &residuejumpindex, core::Size &residueindex)

static void	placeResidueOnPose (core::pose::Pose &pose, core::conformation::ResidueCOP residue)

static void	moveIntoStubFrame (core::conformation::ResidueOP residue, core::kinematics::Stub transform)

static void	moveFromStubFrame (core::conformation::ResidueOP residue, core::kinematics::Stub transform)

static core::kinematics::Stub	residueStubOrientFrame (core::conformation::ResidueCOP const residue)

static core::kinematics::Stub	residueStubCentroidFrame (core::conformation::ResidueCOP const residue)

static Vector	residueStubCentroid (core::conformation::ResidueCOP const residue)

Private Member Functions
	StubGenerator ()

Member Typedef Documentation

◆ Matrix

typedef numeric::xyzMatrix< core::Real > protocols::hotspot_hashing::StubGenerator::Matrix

◆ Vector

typedef numeric::xyzVector< core::Real > protocols::hotspot_hashing::StubGenerator::Vector

Constructor & Destructor Documentation

◆ StubGenerator()

protocols::hotspot_hashing::StubGenerator::StubGenerator ( )

private

Member Function Documentation

◆ getStubByName()

core::conformation::ResidueOP protocols::hotspot_hashing::StubGenerator::getStubByName ( std::string name )

static

References core::conformation::ResidueFactory::create_residue(), moveFromStubFrame(), residueStubCentroidFrame(), and core::chemical::rsd_set_from_cmd_line().

Referenced by protocols::hotspot_hashing::movers::PlaceProbeMover::apply().

◆ moveFromStubFrame()

void protocols::hotspot_hashing::StubGenerator::moveFromStubFrame	(	core::conformation::ResidueOP	residue,
		core::kinematics::Stub	transform
	)

static

References core::kinematics::Stub::global2local().

Referenced by protocols::hotspot_hashing::SearchPatternRotSetOp::get_rigid_body_confs(), and getStubByName().

◆ moveIntoStubFrame()

void protocols::hotspot_hashing::StubGenerator::moveIntoStubFrame	(	core::conformation::ResidueOP	residue,
		core::kinematics::Stub	transform
	)

static

References core::kinematics::Stub::local2global().

Referenced by protocols::hotspot_hashing::SearchPatternRotSetOp::get_rigid_body_confs(), and placeResidueAtTransform().

◆ placeResidueAtTransform()

void protocols::hotspot_hashing::StubGenerator::placeResidueAtTransform	(	core::pose::Pose &	pose,
		core::conformation::ResidueCOP	sourceResidue,
		core::kinematics::Stub	transform,
		core::Size &	residuejumpindex,
		core::Size &	residueindex
	)

static

References moveIntoStubFrame(), core::pose::Pose::num_jump(), placeResidueOnPose(), core::pose::Pose::residue(), core::pose::Pose::size(), protocols::hotspot_hashing::tr(), and core::conformation::Residue::xyz().

Referenced by protocols::hotspot_hashing::movers::PlaceProbeMover::execute_one_search().

◆ placeResidueOnPose()

void protocols::hotspot_hashing::StubGenerator::placeResidueOnPose	(	core::pose::Pose &	pose,
		core::conformation::ResidueCOP	residue
	)

static

References core::pose::Pose::append_residue_by_jump(), core::pose::Pose::conformation(), core::kinematics::RT::get_rotation(), core::kinematics::RT::get_translation(), core::pose::Pose::jump(), core::pose::Pose::num_jump(), core::pose::Pose::residue(), core::kinematics::Jump::rotation_by_matrix(), core::pose::Pose::set_jump(), core::pose::Pose::size(), protocols::hotspot_hashing::tr(), core::kinematics::Jump::translation_along_axis(), core::conformation::Conformation::upstream_jump_stub(), core::kinematics::Stub::v, and core::conformation::Residue::xyz().

Referenced by protocols::hotspot_hashing::movers::PlaceSurfaceProbe::create_partitioned_search_pattern(), protocols::hotspot_hashing::movers::PlaceSurfaceProbe::create_search_pattern(), and placeResidueAtTransform().

◆ residueStubCentroid()

StubGenerator::Vector protocols::hotspot_hashing::StubGenerator::residueStubCentroid ( core::conformation::ResidueCOP const residue )

static

Referenced by residueStubCentroidFrame().

◆ residueStubCentroidFrame()

core::kinematics::Stub protocols::hotspot_hashing::StubGenerator::residueStubCentroidFrame ( core::conformation::ResidueCOP const residue )

static

References core::kinematics::Stub::from_four_points(), and residueStubCentroid().

Referenced by protocols::hotspot_hashing::movers::PlaceProbeMover::execute_one_search(), protocols::hotspot_hashing::SearchPatternRotSetOp::get_rigid_body_confs(), getStubByName(), and protocols::hotspot_hashing::SearchPatternRotSetOp::increase_packer_residue_radius().

◆ residueStubOrientFrame()

core::kinematics::Stub protocols::hotspot_hashing::StubGenerator::residueStubOrientFrame ( core::conformation::ResidueCOP const residue )

static

References core::pose::motif::a(), and protocols::match::upstream::b.

Referenced by protocols::hotspot_hashing::movers::PlaceProbeMover::execute_one_search().

The documentation for this class was generated from the following files:

src/protocols/hotspot_hashing/StubGenerator.hh
src/protocols/hotspot_hashing/StubGenerator.cc