#include <ProteinSilentReport.hh>

Inheritance diagram for protocols::features::ProteinSilentReport:

Public Types
typedef std::map< core::Size, core::pose::PoseOP >	StructureMap

Public Types inherited from protocols::features::Report
typedef utility::vector1< FeaturesReporterOP >	FeaturesReporters

Public Member Functions
	ProteinSilentReport ()

core::Size	version () override

bool	is_initialized () const

void	initialize (utility::sql_database::sessionOP db_session)

void	apply (core::pose::Pose const &pose, utility::sql_database::sessionOP db_sesion) override

void	apply (core::pose::Pose const &pose, utility::sql_database::sessionOP db_sesion, std::string const &tag)

void	load_pose (utility::sql_database::sessionOP db_session, StructureID struct_id, core::pose::Pose &pose)

void	load_pose (utility::sql_database::sessionOP db_session, StructureID struct_id, std::set< core::Size > residue_numbers, core::pose::Pose &pose)

void	write_schema_to_db (utility::sql_database::sessionOP db_session) const

void	delete_pose_from_tag (utility::sql_database::sessionOP db_session, std::string const &tag)

void	delete_pose (utility::sql_database::sessionOP db_session, StructureID const &struct_id)

core::Size	get_protocol_id () const

core::Size	get_batch_id () const

Public Member Functions inherited from protocols::features::Report
	Report ()

	Report (Report const &src)

	~Report () override

Private Member Functions
void	write_protocol_report (utility::sql_database::sessionOP db_session)

void	write_full_report (core::pose::Pose const &pose, utility::sql_database::sessionOP db_session, std::string const &tag)

void	choose_database_filter ()

Private Attributes
bool	initialized_

DatabaseFilterOP	database_filter_

core::Size	protocol_id_

core::Size	batch_id_

StructureMap	structure_map_

protocols::features::ProtocolFeaturesOP	protocol_features_

protocols::features::BatchFeaturesOP	batch_features_

protocols::features::PdbDataFeaturesOP	pdb_data_features_

protocols::features::StructureFeaturesOP	structure_features_

protocols::features::StructureScoresFeaturesOP	structure_scores_features_

protocols::features::ScoreTypeFeaturesOP	score_type_features_

protocols::features::PoseConformationFeaturesOP	pose_conformation_features_

protocols::features::PoseCommentsFeaturesOP	pose_comments_features_

protocols::features::ProteinResidueConformationFeaturesOP	protein_residue_conformation_features_

protocols::features::ResidueFeaturesOP	residue_features_

protocols::features::ResidueConformationFeaturesOP	residue_conformation_features_

protocols::features::JobDataFeaturesOP	job_data_features_

utility::vector1< protocols::features::FeaturesReporterOP >	features_reporters_

Additional Inherited Members
Protected Attributes inherited from protocols::features::Report
FeaturesReporters	reporters_

Member Typedef Documentation

◆ StructureMap

typedef std::map< core::Size, core::pose::PoseOP > protocols::features::ProteinSilentReport::StructureMap

Constructor & Destructor Documentation

◆ ProteinSilentReport()

protocols::features::ProteinSilentReport::ProteinSilentReport ( )

References database_filter_, features_reporters_, protocols::features::get_DB_filter_ptr(), job_data_features_, pdb_data_features_, pose_comments_features_, pose_conformation_features_, protein_residue_conformation_features_, protocol_id_, residue_conformation_features_, residue_features_, score_type_features_, and structure_features_.

Member Function Documentation

◆ apply() [1/2]

void protocols::features::ProteinSilentReport::apply	(	core::pose::Pose const &	pose,
		utility::sql_database::sessionOP	db_sesion
	)

overridevirtual

Implements protocols::features::Report.

◆ apply() [2/2]

void protocols::features::ProteinSilentReport::apply	(	core::pose::Pose const &	pose,
		utility::sql_database::sessionOP	db_sesion,
		std::string const &	tag
	)

◆ choose_database_filter()

void protocols::features::ProteinSilentReport::choose_database_filter ( )

private

◆ delete_pose()

void protocols::features::ProteinSilentReport::delete_pose	(	utility::sql_database::sessionOP	db_session,
		StructureID const &	struct_id
	)

References job_data_features_, pdb_data_features_, pose_comments_features_, pose_conformation_features_, protein_residue_conformation_features_, residue_conformation_features_, residue_features_, structure_features_, and structure_scores_features_.

Referenced by delete_pose_from_tag().

◆ delete_pose_from_tag()

void protocols::features::ProteinSilentReport::delete_pose_from_tag	(	utility::sql_database::sessionOP	db_session,
		std::string const &	tag
	)

References delete_pose(), protocol_id_, and structure_features_.

◆ get_batch_id()

core::Size protocols::features::ProteinSilentReport::get_batch_id ( ) const

References batch_id_.

◆ get_protocol_id()

core::Size protocols::features::ProteinSilentReport::get_protocol_id ( ) const

References protocol_id_.

◆ initialize()

void protocols::features::ProteinSilentReport::initialize ( utility::sql_database::sessionOP db_session )

References initialized_, write_protocol_report(), and write_schema_to_db().

◆ is_initialized()

bool protocols::features::ProteinSilentReport::is_initialized ( ) const

References initialized_.

◆ load_pose() [1/2]

void protocols::features::ProteinSilentReport::load_pose	(	utility::sql_database::sessionOP	db_session,
		StructureID	struct_id,
		core::pose::Pose &	pose
	)

Referenced by protocols::antibody::AntibodyDatabaseManager::load_cdr_pose(), and protocols::antibody::AntibodyDatabaseManager::load_cdr_poses().

◆ load_pose() [2/2]

void protocols::features::ProteinSilentReport::load_pose	(	utility::sql_database::sessionOP	db_session,
		StructureID	struct_id,
		std::set< core::Size >	residue_numbers,
		core::pose::Pose &	pose
	)

◆ version()

Size protocols::features::ProteinSilentReport::version ( )

overridevirtual

Implements protocols::features::Report.

◆ write_full_report()

void protocols::features::ProteinSilentReport::write_full_report	(	core::pose::Pose const &	pose,
		utility::sql_database::sessionOP	db_session,
		std::string const &	tag
	)