core::pack::interaction_graph::SparseMatrixIndex Class Reference

#include <SparseMatrixIndex.hh>

Inheritance diagram for core::pack::interaction_graph::SparseMatrixIndex:

Public Member Functions
	SparseMatrixIndex ()
void	set_aa_type (int aa)
int	get_aa_type () const
void	set_state_ind_for_this_aa_type (int state_ind)
int	get_state_ind_for_this_aa_type () const

Protected Attributes
int	aa_type_
int	state_ind_for_this_aa_type_

Constructor & Destructor Documentation

core::pack::interaction_graph::SparseMatrixIndex::SparseMatrixIndex ( )

inline

Member Function Documentation

int core::pack::interaction_graph::SparseMatrixIndex::get_aa_type ( ) const

inline

References aa_type_.

Referenced by core::pack::interaction_graph::LazyNode::aatype_for_state(), core::pack::interaction_graph::DoubleLazyNode::aatype_for_state(), protocols::flexpack::interaction_graph::OTFFlexbbEdge::compute_altbbconf_alternate_state_energy(), core::pack::interaction_graph::LinearMemNode::compute_pair_energy_for_current_state(), protocols::flexpack::interaction_graph::OTFFlexbbEdge::compute_samebbconf_alternate_state_energy_first_node(), protocols::flexpack::interaction_graph::OTFFlexbbEdge::compute_samebbconf_alternate_state_energy_second_node(), core::pack::interaction_graph::AminoAcidNeighborSparseMatrix< core::PackerEnergy >::get_offset(), core::pack::interaction_graph::AminoAcidNeighborSparseMatrix< core::PackerEnergy >::get_submatrix_index(), core::pack::interaction_graph::DoubleLazyEdge::get_two_body_energy_smi(), core::pack::interaction_graph::LazyNode::print(), core::pack::interaction_graph::LinearMemNode::print(), core::pack::interaction_graph::DoubleLazyNode::print(), core::pack::interaction_graph::LazyNode::print_internal_energies(), core::pack::interaction_graph::DoubleLazyNode::print_internal_energies(), core::pack::interaction_graph::LinearMemNode::print_internal_energies(), core::pack::interaction_graph::PDNode::print_internal_energies(), core::pack::interaction_graph::PDNode::project_deltaE_for_substitution(), core::pack::interaction_graph::DoubleLazyEdge::read_aa_submatrix(), and core::pack::interaction_graph::DoubleLazyEdge::set_aa_submatrix().

int core::pack::interaction_graph::SparseMatrixIndex::get_state_ind_for_this_aa_type ( ) const

inline

References state_ind_for_this_aa_type_.

Referenced by core::pack::interaction_graph::AminoAcidNeighborSparseMatrix< core::PackerEnergy >::get_submatrix_index(), core::pack::interaction_graph::LazyNode::print(), core::pack::interaction_graph::LinearMemNode::print(), core::pack::interaction_graph::DoubleLazyNode::print(), core::pack::interaction_graph::LazyNode::print_internal_energies(), core::pack::interaction_graph::DoubleLazyNode::print_internal_energies(), core::pack::interaction_graph::LinearMemNode::print_internal_energies(), core::pack::interaction_graph::PDNode::print_internal_energies(), core::pack::interaction_graph::PDNode::project_deltaE_for_substitution(), core::pack::interaction_graph::DoubleLazyEdge::read_aa_submatrix(), core::pack::interaction_graph::AminoAcidNeighborSparseMatrix< core::PackerEnergy >::set(), and core::pack::interaction_graph::DoubleLazyEdge::set_aa_submatrix().

void core::pack::interaction_graph::SparseMatrixIndex::set_aa_type ( int  aa )

inline

References protocols::cluster::calibur::aa, and aa_type_.

Referenced by core::pack::interaction_graph::LazyEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::DoubleLazyEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::PDEdge::acknowledge_state_zeroed(), and core::pack::interaction_graph::LinearMemEdge::acknowledge_state_zeroed().

void core::pack::interaction_graph::SparseMatrixIndex::set_state_ind_for_this_aa_type ( int  state_ind )

inline

References state_ind_for_this_aa_type_.

Referenced by core::pack::interaction_graph::LazyEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::DoubleLazyEdge::acknowledge_state_zeroed(), core::pack::interaction_graph::PDEdge::acknowledge_state_zeroed(), and core::pack::interaction_graph::LinearMemEdge::acknowledge_state_zeroed().

Member Data Documentation

int core::pack::interaction_graph::SparseMatrixIndex::aa_type_

protected

Referenced by get_aa_type(), and set_aa_type().

int core::pack::interaction_graph::SparseMatrixIndex::state_ind_for_this_aa_type_

protected

Referenced by get_state_ind_for_this_aa_type(), and set_state_ind_for_this_aa_type().

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The documentation for this class was generated from the following file:

• src/core/pack/interaction_graph/SparseMatrixIndex.hh