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protocols::surface_docking::SurfaceDockingProtocol Member List

This is the complete list of members for protocols::surface_docking::SurfaceDockingProtocol, including all inherited members.

abinitio_protocols::surface_docking::SurfaceDockingProtocolprivate
apply(core::pose::Pose &pose) overrideprotocols::surface_docking::SurfaceDockingProtocolvirtual
calc_secondary_structure(core::pose::Pose &pose)protocols::surface_docking::SurfaceDockingProtocolprivate
calc_secondary_structure_with_surface(core::pose::Pose const &pose)protocols::surface_docking::SurfaceDockingProtocolprivate
centroid_relax_protocols::surface_docking::SurfaceDockingProtocolprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const overrideprotocols::surface_docking::SurfaceDockingProtocolvirtual
copy_data(SurfaceDockingProtocol object_to_copy_to, SurfaceDockingProtocol object_to_copy_from)protocols::surface_docking::SurfaceDockingProtocolprivate
create()protocols::moves::Movervirtual
create_surface_packer_task(core::pose::Pose const &pose, core::Size const first_protein_residue)protocols::surface_docking::SurfaceDockingProtocolprivate
current_job_protocols::moves::Moverprivate
current_tag_protocols::moves::Moverprivate
fresh_instance() const overrideprotocols::surface_docking::SurfaceDockingProtocolvirtual
fullatom_relax_protocols::surface_docking::SurfaceDockingProtocolprivate
get_additional_output()protocols::moves::Movervirtual
get_current_job() constprotocols::moves::Mover
get_current_tag() constprotocols::moves::Moverinline
get_input_pose() constprotocols::moves::Mover
get_last_move_status() constprotocols::moves::Mover
get_name() const overrideprotocols::surface_docking::SurfaceDockingProtocolvirtual
get_native_pose() constprotocols::moves::Mover
get_self_ptr() constprotocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() constprotocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() constprotocols::moves::Moverinline
info()protocols::moves::Moverinlinevirtual
info() constprotocols::moves::Moverinlinevirtual
info_protocols::moves::Moverprivate
init()protocols::surface_docking::SurfaceDockingProtocolprivate
initialize_surface_energies(core::pose::Pose &pose, core::Size first_protein_residue)protocols::surface_docking::SurfaceDockingProtocolprivate
input_pose_protocols::moves::Moverprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
last_status_protocols::moves::Moverprivate
merge_protein_surface_poses(core::pose::Pose &pose, core::pose::Pose const &surface, core::pose::Pose const &protein)protocols::surface_docking::SurfaceDockingProtocolprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
native_pose_protocols::moves::Moverprivate
pack_rotamers_fullatom_protocols::surface_docking::SurfaceDockingProtocolprivate
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)protocols::moves::Movervirtual
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
position_above_surface_protocols::surface_docking::SurfaceDockingProtocolprivate
provide_citation_info(basic::citation_manager::CitationCollectionList &) constprotocols::moves::Movervirtual
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() constprotocols::moves::Movervirtual
reinitialize_for_new_input() constprotocols::moves::Movervirtual
reset_status()protocols::moves::Mover
score_sidechain_pack_protocols::surface_docking::SurfaceDockingProtocolprivate
sec_struct_protocols::surface_docking::SurfaceDockingProtocolprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_secondary_structure(core::pose::Pose &pose)protocols::surface_docking::SurfaceDockingProtocolprivate
set_surface_parameters(core::pose::Pose &pose)protocols::surface_docking::SurfaceDockingProtocolprivate
set_type(std::string const &setting)protocols::moves::Moverinline
setup_abinitio()protocols::surface_docking::SurfaceDockingProtocolprivate
setup_movers(core::pose::Pose const &pose, core::Size const first_protein_residue)protocols::surface_docking::SurfaceDockingProtocolprivate
setup_slide_movers(core::pose::Pose const &pose)protocols::surface_docking::SurfaceDockingProtocolprivate
show(std::ostream &ouput=std::cout) const overrideprotocols::surface_docking::SurfaceDockingProtocolvirtual
slide_away_from_surface_protocols::surface_docking::SurfaceDockingProtocolprivate
slide_into_surface_protocols::surface_docking::SurfaceDockingProtocolprivate
split_protein_surface_poses(core::pose::Pose const &pose, core::pose::Pose &surface, core::pose::Pose &protein)protocols::surface_docking::SurfaceDockingProtocolprivate
Strings typedefprotocols::moves::Mover
surface_orient_protocols::surface_docking::SurfaceDockingProtocolprivate
surface_parameters_protocols::surface_docking::SurfaceDockingProtocolprivate
SurfaceDockingProtocol()protocols::surface_docking::SurfaceDockingProtocol
SurfaceDockingProtocol(SurfaceDockingProtocol const &src)protocols::surface_docking::SurfaceDockingProtocol
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
to_centroid_protocols::surface_docking::SurfaceDockingProtocolprivate
to_full_atom_protocols::surface_docking::SurfaceDockingProtocolprivate
type(const std::string &type_in)protocols::moves::Moverinline
type() constprotocols::moves::Moverinline
type_protocols::moves::Moverprivate
valid_surface_pose(core::pose::Pose const &pose)protocols::surface_docking::SurfaceDockingProtocolprivate
~SurfaceDockingProtocol() overrideprotocols::surface_docking::SurfaceDockingProtocol