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GlycanTreeModeler.cc File Reference

A protocol for optimizing glycan trees using the GlycanSampler from the base of the tree out to the leaves. More...

#include <protocols/carbohydrates/GlycanTreeModeler.hh>
#include <protocols/carbohydrates/GlycanTreeModelerCreator.hh>
#include <protocols/carbohydrates/GlycanSampler.hh>
#include <protocols/carbohydrates/util.hh>
#include <protocols/simple_moves/ConvertRealToVirtualMover.hh>
#include <protocols/simple_moves/ConvertVirtualToRealMover.hh>
#include <protocols/moves/MonteCarlo.hh>
#include <core/select/residue_selector/util.hh>
#include <core/select/residue_selector/ResidueSelector.hh>
#include <core/select/residue_selector/GlycanResidueSelector.hh>
#include <core/select/residue_selector/GlycanLayerSelector.hh>
#include <core/select/residue_selector/ReturnResidueSubsetSelector.hh>
#include <core/select/residue_selector/AndResidueSelector.hh>
#include <core/select/util.hh>
#include <core/pose/symmetry/util.hh>
#include <core/pose/Pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/carbohydrates/util.hh>
#include <core/conformation/Residue.hh>
#include <core/conformation/util.hh>
#include <core/scoring/ScoreFunction.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/conformation/carbohydrates/GlycanTreeSet.hh>
#include <core/conformation/carbohydrates/GlycanTree.hh>
#include <core/chemical/ResidueType.hh>
#include <core/kinematics/MoveMap.hh>
#include <core/optimization/MinimizerOptions.hh>
#include <core/simple_metrics/metrics/TimingProfileMetric.hh>
#include <protocols/minimization_packing/MinMover.hh>
#include <protocols/minimization_packing/PackRotamersMover.hh>
#include <protocols/simple_moves/BackboneMover.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/run.OptionKeys.gen.hh>
#include <basic/Tracer.hh>
#include <utility/tag/Tag.hh>
#include <utility/string_util.hh>
#include <basic/citation_manager/CitationManager.hh>
#include <basic/citation_manager/CitationCollection.hh>
#include <basic/citation_manager/UnpublishedModuleInfo.hh>
#include <numeric/random/random.hh>
#include <utility/tag/XMLSchemaGeneration.hh>
#include <protocols/moves/mover_schemas.hh>
#include <protocols/rosetta_scripts/util.hh>
#include <cmath>

Namespaces

 protocols
 The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
 
 protocols::carbohydrates
 

Functions

static basic::Tracer TR ("protocols.carbohydrates.GlycanTreeModeler")
 
std::ostream & protocols::carbohydrates::operator<< (std::ostream &os, GlycanTreeModeler const &mover)
 private methods /// More...
 

Detailed Description

A protocol for optimizing glycan trees using the GlycanSampler from the base of the tree out to the leaves.

Author
Jared Adolf-Bryfogle (jadol.nosp@m.fbr@.nosp@m.gmail.nosp@m..com)
Sebastian Raemisch (raemi.nosp@m.sch@.nosp@m.scrip.nosp@m.ps.e.nosp@m.du)

Function Documentation

static basic::Tracer TR ( "protocols.carbohydrates.GlycanTreeModeler"  )
static