Rosetta: protocols::pose_sewing::filters::HasDisulfideFilter Class Reference

Rosetta

filters based on disulfide presence More...

#include <HasDisulfideFilter.hh>

Inheritance diagram for protocols::pose_sewing::filters::HasDisulfideFilter:

Inheritance graph

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Public Member Functions
	HasDisulfideFilter ()

	~HasDisulfideFilter () override

bool	apply (core::pose::Pose const &pose) const override
	returns true if the structure passes the filter, false otherwise More...

void	set_first_selector (core::select::residue_selector::ResidueSelectorCOP selector)

void	set_second_selector (core::select::residue_selector::ResidueSelectorCOP selector)

core::Real	report_sm (core::pose::Pose const &pose) const override
	required for reporting score values More...

void	report (std::ostream &os, core::pose::Pose const &pose) const override
	allows printing data to a stream More...

std::string	name () const override

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &data) override
	parse XML tag (to use this Filter in Rosetta Scripts) More...

protocols::filters::FilterOP	fresh_instance () const override
	required in the context of the parser/scripting scheme More...

protocols::filters::FilterOP	clone () const override
	required in the context of the parser/scripting scheme More...

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	~Filter () override

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Attributes
core::select::residue_selector::ResidueSelectorCOP	first_selector_

core::select::residue_selector::ResidueSelectorCOP	second_selector_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Detailed Description

filters based on disulfide presence

Constructor & Destructor Documentation

◆ HasDisulfideFilter()

protocols::pose_sewing::filters::HasDisulfideFilter::HasDisulfideFilter ( )

◆ ~HasDisulfideFilter()

protocols::pose_sewing::filters::HasDisulfideFilter::~HasDisulfideFilter ( )

override

Member Function Documentation

◆ apply()

bool protocols::pose_sewing::filters::HasDisulfideFilter::apply ( core::pose::Pose const & pose ) const

overridevirtual

returns true if the structure passes the filter, false otherwise

Implements protocols::filters::Filter.

References first_selector_, core::conformation::Residue::is_bonded(), core::chemical::ResidueType::is_disulfide_bonded(), core::pose::Pose::residue(), second_selector_, core::pose::Pose::size(), core::pose::Pose::total_residue(), and core::conformation::Residue::type().

◆ class_name()

std::string protocols::pose_sewing::filters::HasDisulfideFilter::class_name ( )

static

Referenced by protocols::pose_sewing::filters::HasDisulfideFilterCreator::keyname(), name(), and provide_xml_schema().

◆ clone()

protocols::filters::FilterOP protocols::pose_sewing::filters::HasDisulfideFilter::clone ( ) const

overridevirtual

required in the context of the parser/scripting scheme

Implements protocols::filters::Filter.

◆ fresh_instance()

protocols::filters::FilterOP protocols::pose_sewing::filters::HasDisulfideFilter::fresh_instance ( ) const

overridevirtual

required in the context of the parser/scripting scheme

Implements protocols::filters::Filter.

◆ name()

std::string protocols::pose_sewing::filters::HasDisulfideFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

◆ parse_my_tag()

void protocols::pose_sewing::filters::HasDisulfideFilter::parse_my_tag	(	utility::tag::TagCOP	tag,
		basic::datacache::DataMap &	data
	)

overridevirtual

parse XML tag (to use this Filter in Rosetta Scripts)

Reimplemented from protocols::filters::Filter.

References first_selector_, core::select::residue_selector::get_residue_selector(), and second_selector_.

◆ provide_xml_schema()

void protocols::pose_sewing::filters::HasDisulfideFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References core::select::residue_selector::attributes_for_parse_residue_selector(), class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::pose_sewing::filters::HasDisulfideFilterCreator::provide_xml_schema().

◆ report()

void protocols::pose_sewing::filters::HasDisulfideFilter::report	(	std::ostream &	os,
		core::pose::Pose const &	pose
	)		const

overridevirtual

allows printing data to a stream

Reimplemented from protocols::filters::Filter.

◆ report_sm()

core::Real protocols::pose_sewing::filters::HasDisulfideFilter::report_sm ( core::pose::Pose const & pose ) const

overridevirtual

required for reporting score values

Reimplemented from protocols::filters::Filter.

◆ set_first_selector()

void protocols::pose_sewing::filters::HasDisulfideFilter::set_first_selector ( core::select::residue_selector::ResidueSelectorCOP selector )

References first_selector_.

◆ set_second_selector()

void protocols::pose_sewing::filters::HasDisulfideFilter::set_second_selector ( core::select::residue_selector::ResidueSelectorCOP selector )

References second_selector_.

Member Data Documentation

◆ first_selector_

core::select::residue_selector::ResidueSelectorCOP protocols::pose_sewing::filters::HasDisulfideFilter::first_selector_

private

Referenced by apply(), parse_my_tag(), and set_first_selector().

◆ second_selector_

core::select::residue_selector::ResidueSelectorCOP protocols::pose_sewing::filters::HasDisulfideFilter::second_selector_

private

Referenced by apply(), parse_my_tag(), and set_second_selector().

The documentation for this class was generated from the following files:

src/protocols/pose_sewing/filters/HasDisulfideFilter.hh
src/protocols/pose_sewing/filters/HasDisulfideFilter.cc