Rosetta  2021.07
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Residue.cc File Reference

Method definitions for the Residue class. More...

#include <core/conformation/Residue.hh>
#include <core/conformation/PseudoBond.hh>
#include <core/conformation/Conformation.hh>
#include <core/conformation/orbitals/OrbitalXYZCoords.hh>
#include <core/conformation/util.hh>
#include <core/id/PartialAtomID.hh>
#include <core/kinematics/Stub.hh>
#include <core/kinematics/FoldTree.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/VariantType.hh>
#include <core/chemical/ResidueTypeSet.hh>
#include <core/chemical/Atom.hh>
#include <core/chemical/ResidueConnection.hh>
#include <core/chemical/AtomICoor.hh>
#include <core/chemical/rings/RingConformer.hh>
#include <core/chemical/rings/RingConformerSet.hh>
#include <core/chemical/ChemicalManager.hh>
#include <basic/options/option.hh>
#include <basic/options/keys/packing.OptionKeys.gen.hh>
#include <basic/basic.hh>
#include <basic/Tracer.hh>
#include <basic/datacache/BasicDataCache.hh>
#include <numeric/xyzVector.hh>
#include <numeric/xyz.functions.hh>
#include <utility/assert.hh>
#include <utility/py/PyAssert.hh>
#include <utility/vector1.hh>
#include <iostream>

Namespaces

 core
 A class for reading in the atom type properties.
 
 core::conformation
 

Functions

static basic::Tracer core::conformation::TR ("core.conformation.Residue")
 
chemical::ResidueType const & core::conformation::reference_from_restype_ptr (chemical::ResidueTypeCOP rsd_type)
 This function enforces the fact that ResidueTypes must be constructed with non-null-pointer ResidueTypeCOPs. More...
 
bool core::conformation::missing_stubs_build (core::Size ii, Residue const &residue, utility::vector1< bool > const &missing, Vector &coordinate)
 
void core::conformation::improper_build (Residue const &residue, core::Size missing, core::Size parent, core::Size sibling1, core::Size sibling2, Vector &coordinate)
 Build. More...
 
std::ostream & core::conformation::operator<< (std::ostream &os, Residue const &res)
 

Detailed Description

Method definitions for the Residue class.

Author
Phil Bradley