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Rosetta
2021.07
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#include <SpanTopologyMatchPoseFilter.hh>
Public Member Functions | |
SpanTopologyMatchPoseFilter () | |
bool | apply (core::pose::Pose const &pose) const override |
Returns true if the given pose passes the filter, false otherwise. More... | |
void | report (std::ostream &out, core::pose::Pose const &pose) const override |
core::Real | report_sm (core::pose::Pose const &pose) const override |
used to report filter internals through a score or silent file More... | |
core::Real | compute (core::pose::Pose const &pose) const |
filters::FilterOP | clone () const override |
filters::FilterOP | fresh_instance () const override |
~SpanTopologyMatchPoseFilter () override | |
void | parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override |
Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More... | |
std::string | name () const override |
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Filter () | |
Filter (std::string const &) | |
Filter (Filter const &) | |
~Filter () override | |
virtual std::string | get_type () const |
std::string | get_user_defined_name () const |
void | set_user_defined_name (std::string const &name) |
virtual void | clear () |
used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More... | |
virtual core::Real | score (core::pose::Pose &pose) |
virtual void | provide_citation_info (basic::citation_manager::CitationCollectionList &) const |
Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More... | |
Static Public Member Functions | |
static std::string | class_name () |
static void | provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd) |
Private Member Functions | |
std::string | actual_topology (core::pose::Pose const &pose) const |
std::string | span_file_topology (core::pose::Pose const &pose) const |
core::Real | compare_topo_strings (std::string const ts_span, std::string const ts_actual) const |
Private Attributes | |
core::Real | threshold_ = 0.3 |
std::string | output_ = "" |
Additional Inherited Members | |
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std::string | scorename_ |
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inline |
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override |
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private |
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overridevirtual |
Returns true if the given pose passes the filter, false otherwise.
Implements protocols::filters::Filter.
References compute(), and threshold_.
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static |
Referenced by name(), and provide_xml_schema().
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inlineoverridevirtual |
Implements protocols::filters::Filter.
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private |
References protocols::analysis::total.
Referenced by compute().
core::Real protocols::simple_filters::SpanTopologyMatchPoseFilter::compute | ( | core::pose::Pose const & | pose | ) | const |
References actual_topology(), compare_topo_strings(), protocols::filters::Filter::score(), span_file_topology(), and protocols::simple_filters::TR().
Referenced by apply(), report(), and report_sm().
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inlineoverridevirtual |
Implements protocols::filters::Filter.
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overridevirtual |
Reimplemented from protocols::filters::Filter.
References class_name().
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overridevirtual |
Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.
Reimplemented from protocols::filters::Filter.
References output_, threshold_, and protocols::simple_filters::TR().
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static |
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overridevirtual |
Reimplemented from protocols::filters::Filter.
References compute().
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overridevirtual |
used to report filter internals through a score or silent file
Reimplemented from protocols::filters::Filter.
References compute().
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private |
References core::pose::Pose::conformation(), core::sequence::end, core::conformation::Residue::is_protein(), core::pose::symmetry::is_symmetric(), core::conformation::Conformation::membrane_info(), core::pose::Pose::residue(), core::pose::Pose::size(), protocols::loops::start, and core::pose::symmetry::symmetry_info().
Referenced by compute().
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private |
Referenced by parse_my_tag().
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private |
Referenced by apply(), and parse_my_tag().