#include <SpanTopologyMatchPoseFilter.hh>

Inheritance diagram for protocols::simple_filters::SpanTopologyMatchPoseFilter:

Public Member Functions
	SpanTopologyMatchPoseFilter ()

bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...

void	report (std::ostream &out, core::pose::Pose const &pose) const override

core::Real	report_sm (core::pose::Pose const &pose) const override
	used to report filter internals through a score or silent file More...

core::Real	compute (core::pose::Pose const &pose) const

filters::FilterOP	clone () const override

filters::FilterOP	fresh_instance () const override

	~SpanTopologyMatchPoseFilter () override

void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
	Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...

std::string	name () const override

Public Member Functions inherited from protocols::filters::Filter
	Filter ()

	Filter (std::string const &)

	Filter (Filter const &)

	~Filter () override

virtual std::string	get_type () const

std::string	get_user_defined_name () const

void	set_user_defined_name (std::string const &name)

virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...

virtual core::Real	score (core::pose::Pose &pose)

virtual bool	filter_provides_citation_info () const
	Does this filter provide information about how to cite it? More...

virtual utility::vector1 < basic::citation_manager::CitationCollectionCOP >	provide_citation_info () const
	Provide the citation. More...

virtual bool	filter_is_unpublished () const
	Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...

virtual utility::vector1 < basic::citation_manager::UnpublishedModuleInfoCOP >	provide_authorship_info_for_unpublished () const
	Provide a list of authors and their e-mail addresses, as strings. More...

Static Public Member Functions
static std::string	class_name ()

static void	provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Member Functions
std::string	actual_topology (core::pose::Pose const &pose) const

std::string	span_file_topology (core::pose::Pose const &pose) const

core::Real	compare_topo_strings (std::string const ts_span, std::string const ts_actual) const

Private Attributes
core::Real	threshold_ = 0.3

std::string	output_ = ""

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::simple_filters::SpanTopologyMatchPoseFilter::SpanTopologyMatchPoseFilter ( )

inline

protocols::simple_filters::SpanTopologyMatchPoseFilter::~SpanTopologyMatchPoseFilter ( )

override

Member Function Documentation

std::string protocols::simple_filters::SpanTopologyMatchPoseFilter::actual_topology ( core::pose::Pose const & pose ) const

private

References core::pose::Pose::conformation(), core::conformation::Residue::is_protein(), core::conformation::Conformation::membrane_info(), core::pose::Pose::residue(), core::conformation::Residue::seqpos(), core::pose::Pose::size(), and protocols::simple_filters::TR().

Referenced by compute().

bool protocols::simple_filters::SpanTopologyMatchPoseFilter::apply ( core::pose::Pose const & pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), and threshold_.

std::string protocols::simple_filters::SpanTopologyMatchPoseFilter::class_name ( )

static

Referenced by name(), and provide_xml_schema().

filters::FilterOP protocols::simple_filters::SpanTopologyMatchPoseFilter::clone ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

core::Real protocols::simple_filters::SpanTopologyMatchPoseFilter::compare_topo_strings	(	std::string const	ts_span,
		std::string const	ts_actual
	)		const

private

References protocols::analysis::total.

Referenced by compute().

core::Real protocols::simple_filters::SpanTopologyMatchPoseFilter::compute ( core::pose::Pose const & pose ) const

References actual_topology(), compare_topo_strings(), protocols::filters::Filter::score(), span_file_topology(), and protocols::simple_filters::TR().

Referenced by apply(), report(), and report_sm().

filters::FilterOP protocols::simple_filters::SpanTopologyMatchPoseFilter::fresh_instance ( ) const

inlineoverridevirtual

Implements protocols::filters::Filter.

std::string protocols::simple_filters::SpanTopologyMatchPoseFilter::name ( ) const

overridevirtual

Reimplemented from protocols::filters::Filter.

References class_name().

void protocols::simple_filters::SpanTopologyMatchPoseFilter::parse_my_tag	(	utility::tag::TagCOP	,
		basic::datacache::DataMap &
	)

overridevirtual

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References output_, threshold_, and protocols::simple_filters::TR().

void protocols::simple_filters::SpanTopologyMatchPoseFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition & xsd )

static

References class_name(), and protocols::filters::xsd_type_definition_w_attributes().

Referenced by protocols::simple_filters::SpanTopologyMatchPoseFilterCreator::provide_xml_schema().

void protocols::simple_filters::SpanTopologyMatchPoseFilter::report	(	std::ostream &	out,
		core::pose::Pose const &	pose
	)		const

overridevirtual

Reimplemented from protocols::filters::Filter.

References compute().

core::Real protocols::simple_filters::SpanTopologyMatchPoseFilter::report_sm ( core::pose::Pose const & ) const

overridevirtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

std::string protocols::simple_filters::SpanTopologyMatchPoseFilter::span_file_topology ( core::pose::Pose const & pose ) const

private

References core::pose::Pose::conformation(), core::sequence::end, core::conformation::Residue::is_protein(), core::pose::symmetry::is_symmetric(), core::conformation::Conformation::membrane_info(), core::pose::Pose::residue(), core::pose::Pose::size(), protocols::loops::start, and core::pose::symmetry::symmetry_info().

Referenced by compute().

Member Data Documentation

std::string protocols::simple_filters::SpanTopologyMatchPoseFilter::output_ = ""

private

Referenced by parse_my_tag().

core::Real protocols::simple_filters::SpanTopologyMatchPoseFilter::threshold_ = 0.3

private

Referenced by apply(), and parse_my_tag().

The documentation for this class was generated from the following files:

src/protocols/simple_filters/SpanTopologyMatchPoseFilter.hh
src/protocols/simple_filters/SpanTopologyMatchPoseFilter.cc

Public Member Functions

Static Public Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation