Public Member Functions | Static Public Member Functions | Private Member Functions | Private Attributes | List of all members
protocols::simple_filters::SpanTopologyMatchPoseFilter Class Reference

#include <SpanTopologyMatchPoseFilter.hh>

Inheritance diagram for protocols::simple_filters::SpanTopologyMatchPoseFilter:
Inheritance graph

Public Member Functions

 SpanTopologyMatchPoseFilter ()
bool apply (core::pose::Pose const &pose) const override
 Returns true if the given pose passes the filter, false otherwise. More...
void report (std::ostream &out, core::pose::Pose const &pose) const override
core::Real report_sm (core::pose::Pose const &pose) const override
 used to report filter internals through a score or silent file More...
core::Real compute (core::pose::Pose const &pose) const
filters::FilterOP clone () const override
filters::FilterOP fresh_instance () const override
 ~SpanTopologyMatchPoseFilter () override
void parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &) override
 Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing. More...
std::string name () const override
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 Filter (std::string const &)
 ~Filter () override
virtual std::string get_type () const
std::string get_user_defined_name () const
void set_user_defined_name (std::string const &name)
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real score (core::pose::Pose &pose)
virtual void provide_citation_info (basic::citation_manager::CitationCollectionList &) const
 Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Static Public Member Functions

static std::string class_name ()
static void provide_xml_schema (utility::tag::XMLSchemaDefinition &xsd)

Private Member Functions

std::string actual_topology (core::pose::Pose const &pose) const
std::string span_file_topology (core::pose::Pose const &pose) const
core::Real compare_topo_strings (std::string const ts_span, std::string const ts_actual) const

Private Attributes

core::Real threshold_ = 0.3
std::string output_ = ""

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_

Constructor & Destructor Documentation

◆ SpanTopologyMatchPoseFilter()

protocols::simple_filters::SpanTopologyMatchPoseFilter::SpanTopologyMatchPoseFilter ( )

◆ ~SpanTopologyMatchPoseFilter()

protocols::simple_filters::SpanTopologyMatchPoseFilter::~SpanTopologyMatchPoseFilter ( )

Member Function Documentation

◆ actual_topology()

std::string protocols::simple_filters::SpanTopologyMatchPoseFilter::actual_topology ( core::pose::Pose const &  pose) const

◆ apply()

bool protocols::simple_filters::SpanTopologyMatchPoseFilter::apply ( core::pose::Pose const &  pose) const

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), and threshold_.

◆ class_name()

std::string protocols::simple_filters::SpanTopologyMatchPoseFilter::class_name ( )

Referenced by name(), and provide_xml_schema().

◆ clone()

filters::FilterOP protocols::simple_filters::SpanTopologyMatchPoseFilter::clone ( ) const

◆ compare_topo_strings()

core::Real protocols::simple_filters::SpanTopologyMatchPoseFilter::compare_topo_strings ( std::string const  ts_span,
std::string const  ts_actual 
) const

References protocols::analysis::total.

Referenced by compute().

◆ compute()

core::Real protocols::simple_filters::SpanTopologyMatchPoseFilter::compute ( core::pose::Pose const &  pose) const

◆ fresh_instance()

filters::FilterOP protocols::simple_filters::SpanTopologyMatchPoseFilter::fresh_instance ( ) const

◆ name()

std::string protocols::simple_filters::SpanTopologyMatchPoseFilter::name ( ) const

Reimplemented from protocols::filters::Filter.

References class_name().

◆ parse_my_tag()

void protocols::simple_filters::SpanTopologyMatchPoseFilter::parse_my_tag ( utility::tag::TagCOP  ,

Called by FilterFactory when constructing new Filter. Takes care of the specific mover's parsing.

Reimplemented from protocols::filters::Filter.

References output_, threshold_, and protocols::simple_filters::TR().

◆ provide_xml_schema()

void protocols::simple_filters::SpanTopologyMatchPoseFilter::provide_xml_schema ( utility::tag::XMLSchemaDefinition &  xsd)

◆ report()

void protocols::simple_filters::SpanTopologyMatchPoseFilter::report ( std::ostream &  out,
core::pose::Pose const &  pose 
) const

◆ report_sm()

core::Real protocols::simple_filters::SpanTopologyMatchPoseFilter::report_sm ( core::pose::Pose const &  ) const

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

◆ span_file_topology()

std::string protocols::simple_filters::SpanTopologyMatchPoseFilter::span_file_topology ( core::pose::Pose const &  pose) const

Member Data Documentation

◆ output_

std::string protocols::simple_filters::SpanTopologyMatchPoseFilter::output_ = ""

Referenced by parse_my_tag().

◆ threshold_

core::Real protocols::simple_filters::SpanTopologyMatchPoseFilter::threshold_ = 0.3

Referenced by apply(), and parse_my_tag().

The documentation for this class was generated from the following files: