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protocols::loops::loop_closure::kinematic_closure::KinematicMover Member List

This is the complete list of members for protocols::loops::loop_closure::kinematic_closure::KinematicMover, including all inherited members.

add_filter(protocols::filters::FilterCOP filter)protocols::loops::loop_closure::kinematic_closure::KinematicMoverinline
apply(core::pose::Pose &) overrideprotocols::loops::loop_closure::kinematic_closure::KinematicMovervirtual
BANGLE_MEAN_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
BANGLE_MIN() constprotocols::loops::loop_closure::kinematic_closure::KinematicMoverinline
BANGLE_MIN_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
BANGLE_SD() constprotocols::loops::loop_closure::kinematic_closure::KinematicMoverinline
BANGLE_SD_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
bump_overlap_factor_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
check_rama(core::Real old_rama_score, core::Real new_rama_score)protocols::loops::loop_closure::kinematic_closure::KinematicMover
clear_filters()protocols::loops::loop_closure::kinematic_closure::KinematicMoverinline
clear_info()protocols::moves::Moverinlinevirtual
clone() constprotocols::moves::Movervirtual
count_bb_atoms(const core::pose::Pose &pose, const core::Size start_res, const core::Size end_res) constprotocols::loops::loop_closure::kinematic_closure::KinematicMover
count_bb_atoms_in_residue(const core::pose::Pose &pose, const core::Size position) constprotocols::loops::loop_closure::kinematic_closure::KinematicMover
create()protocols::moves::Movervirtual
current_job_protocols::moves::Moverprivate
current_tag_protocols::moves::Moverprivate
do_hardsphere_bump_check_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
do_rama_check_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
do_sfxn_eval_every_iteration_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
end_res() constprotocols::loops::loop_closure::kinematic_closure::KinematicMoverinline
end_res_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
filters_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
frequency_in_taboo_map(core::Size pos, core::conformation::ppo_torsion_bin) constprotocols::loops::loop_closure::kinematic_closure::KinematicMover
fresh_instance() constprotocols::moves::Movervirtual
get_additional_output()protocols::moves::Movervirtual
get_bb_atoms_for_residue(const core::conformation::Residue &res, const core::Size bb_atom_index) constprotocols::loops::loop_closure::kinematic_closure::KinematicMover
get_bump_overlap_factor() constprotocols::loops::loop_closure::kinematic_closure::KinematicMoverinline
get_bumpcheck_atom_count_for_residue(const core::conformation::Residue &rsd) constprotocols::loops::loop_closure::kinematic_closure::KinematicMover
get_bumpcheck_atoms_for_residue(const core::conformation::Residue &rsd, const core::Size bumpcheck_atom_index) constprotocols::loops::loop_closure::kinematic_closure::KinematicMover
get_current_job() constprotocols::moves::Mover
get_current_tag() constprotocols::moves::Moverinline
get_hardsphere_bump_check()protocols::loops::loop_closure::kinematic_closure::KinematicMovervirtual
get_idealize_loop_first()protocols::loops::loop_closure::kinematic_closure::KinematicMovervirtual
get_input_pose() constprotocols::moves::Mover
get_last_move_status() constprotocols::moves::Mover
get_loop_sequence() constprotocols::loops::loop_closure::kinematic_closure::KinematicMover
get_name() const overrideprotocols::loops::loop_closure::kinematic_closure::KinematicMovervirtual
get_native_pose() constprotocols::moves::Mover
get_rama_check()protocols::loops::loop_closure::kinematic_closure::KinematicMovervirtual
get_sample_nonpivot_torsions()protocols::loops::loop_closure::kinematic_closure::KinematicMover
get_self_ptr() constprotocols::moves::Moverinline
get_self_ptr()protocols::moves::Moverinline
get_self_weak_ptr() constprotocols::moves::Moverinline
get_self_weak_ptr()protocols::moves::Moverinline
get_type() constprotocols::moves::Moverinline
get_vary_bondangles()protocols::loops::loop_closure::kinematic_closure::KinematicMover
idealize_loop_first_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
idl_beta_C_N_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
idl_beta_C_N_CA_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
idl_beta_CA_CM_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
idl_beta_CA_CM_C_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
idl_beta_CM_C_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
idl_beta_CM_C_N_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
idl_beta_N_CA_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
idl_beta_N_CA_CM_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
idl_C_N_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
idl_C_N_CA_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
idl_CA_C_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
idl_CA_C_N_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
idl_N_CA_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
idl_N_CA_C_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
info()protocols::moves::Moverinlinevirtual
info() constprotocols::moves::Moverinlinevirtual
info_protocols::moves::Moverprivate
input_pose_protocols::moves::Moverprivate
insert_sampled_torsion_string_into_taboo_map(core::conformation::torsion_bin_string const &ts)protocols::loops::loop_closure::kinematic_closure::KinematicMover
is_beta_aminoacid(const core::conformation::Residue &res) constprotocols::loops::loop_closure::kinematic_closure::KinematicMover
is_in_taboo_map(core::conformation::torsion_bin_string const &ts) constprotocols::loops::loop_closure::kinematic_closure::KinematicMover
KinematicMover()protocols::loops::loop_closure::kinematic_closure::KinematicMover
last_move_succeeded()protocols::loops::loop_closure::kinematic_closure::KinematicMover
last_move_succeeded_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
last_status_protocols::moves::Moverprivate
loop_begin() constprotocols::loops::loop_closure::kinematic_closure::KinematicMoverinline
loop_begin_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
loop_end() constprotocols::loops::loop_closure::kinematic_closure::KinematicMoverinline
loop_end_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
middle_res() constprotocols::loops::loop_closure::kinematic_closure::KinematicMoverinline
middle_res_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
native_pose_protocols::moves::Moverprivate
nonpivot_res_to_sweep_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
OMEGA_MEAN_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data)protocols::moves::Movervirtual
perform_bump_check(core::pose::Pose const &pose, core::Size const start_res, core::Size const end_res)protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
perform_rama_check(core::pose::Pose const &pose, utility::vector1< core::Real > const &t_ang, utility::vector1< core::Size > const &pivots, core::Size const start_res, core::Size const seg_len)protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
perform_rama_check(core::pose::Pose const &pose, utility::vector1< core::Real > const &t_ang, utility::vector1< core::Size > const &pivots, core::Size const start_res, core::Size const middle_res, core::Size const end_res)protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
perturber()protocols::loops::loop_closure::kinematic_closure::KinematicMover
perturber_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
provide_citation_info(basic::citation_manager::CitationCollectionList &) constprotocols::moves::Movervirtual
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() constprotocols::moves::Movervirtual
reinitialize_for_new_input() constprotocols::moves::Movervirtual
reset_status()protocols::moves::Mover
sample_nonpivot_torsions_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
seg_len_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
segment_length() constprotocols::loops::loop_closure::kinematic_closure::KinematicMoverinline
sequence_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
set_bump_overlap_factor(core::Real bump_overlap_factor)protocols::loops::loop_closure::kinematic_closure::KinematicMoverinline
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinlinevirtual
set_defaults()protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
set_do_sfxn_eval_every_iteration(bool do_sfxn_eval)protocols::loops::loop_closure::kinematic_closure::KinematicMovervirtual
set_filters(utility::vector1< protocols::filters::FilterCOP > const &filters_in)protocols::loops::loop_closure::kinematic_closure::KinematicMoverinline
set_hardsphere_bump_check(bool do_bump_check)protocols::loops::loop_closure::kinematic_closure::KinematicMovervirtual
set_idealize_loop_first(bool idealize)protocols::loops::loop_closure::kinematic_closure::KinematicMovervirtual
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_loop_begin_and_end(core::Size loop_begin, core::Size loop_end)protocols::loops::loop_closure::kinematic_closure::KinematicMover
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_nonpivot_bb_torsion_id(utility::vector1< core::Size > const &bbtorids)protocols::loops::loop_closure::kinematic_closure::KinematicMover
set_nonpivot_res_to_sweep(utility::vector1< core::Size > const &resids)protocols::loops::loop_closure::kinematic_closure::KinematicMover
set_perturber(KinematicPerturberOP perturber_in)protocols::loops::loop_closure::kinematic_closure::KinematicMover
set_pivots(core::Size start_res, core::Size middle_res, core::Size end_res)protocols::loops::loop_closure::kinematic_closure::KinematicMovervirtual
set_rama_check(bool do_rama_check)protocols::loops::loop_closure::kinematic_closure::KinematicMovervirtual
set_sample_nonpivot_torsions(bool sample)protocols::loops::loop_closure::kinematic_closure::KinematicMover
set_sfxn(core::scoring::ScoreFunctionCOP sfxn_in)protocols::loops::loop_closure::kinematic_closure::KinematicMover
set_sweep_nonpivot_torsions(bool sweep)protocols::loops::loop_closure::kinematic_closure::KinematicMover
set_sweep_nsteps(utility::vector1< core::Size > const &nsteps)protocols::loops::loop_closure::kinematic_closure::KinematicMover
set_sweep_start_angle(utility::vector1< core::Real > const &angles_in_degrees)protocols::loops::loop_closure::kinematic_closure::KinematicMover
set_sweep_step_size(utility::vector1< core::Real > const &angle_steps_in_degrees)protocols::loops::loop_closure::kinematic_closure::KinematicMover
set_temperature(core::Real temp_in)protocols::loops::loop_closure::kinematic_closure::KinematicMover
set_type(std::string const &setting)protocols::moves::Moverinline
set_vary_bondangles(bool vary)protocols::loops::loop_closure::kinematic_closure::KinematicMover
sfxn_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
show(std::ostream &output=std::cout) constprotocols::moves::Movervirtual
start_res() constprotocols::loops::loop_closure::kinematic_closure::KinematicMoverinline
start_res_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
Strings typedefprotocols::moves::Mover
sweep_incomplete() constprotocols::loops::loop_closure::kinematic_closure::KinematicMover
sweep_iterator_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
sweep_nonpivot_torsion_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
sweep_nonpivot_torsion_starts_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
sweep_step_sizes_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
sweep_torsion_ids_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
taboo_map_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
taboo_map_max_capacity_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
taboo_master_map_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
TagCOP typedefprotocols::moves::Mover
temperature_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
torsion_features_string(core::pose::Pose const &pose) constprotocols::loops::loop_closure::kinematic_closure::KinematicMover
type(const std::string &type_in)protocols::moves::Moverinline
type() constprotocols::moves::Moverinline
type_protocols::moves::Moverprivate
update_sequence(utility::vector1< core::chemical::AA > const &sequence)protocols::loops::loop_closure::kinematic_closure::KinematicMover
vary_bond_angles_protocols::loops::loop_closure::kinematic_closure::KinematicMoverprivate
~KinematicMover() overrideprotocols::loops::loop_closure::kinematic_closure::KinematicMover