Rosetta  2020.46
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core::fragment::ConstantLengthFragSet Member List

This is the complete list of members for core::fragment::ConstantLengthFragSet, including all inherited members.

add(FrameCOP aFrame)core::fragment::FragSet
add(FrameList const &frames)core::fragment::FragSet
add(FragSet const &frames)core::fragment::FragSet
add(FragID const &)core::fragment::FragSet
add(FragID_List &list)core::fragment::FragSetinline
add_(FrameOP aframe) overridecore::fragment::ConstantLengthFragSetprotectedvirtual
begin() const overridecore::fragment::ConstantLengthFragSetvirtual
clone() const overridecore::fragment::ConstantLengthFragSetinlinevirtual
clone_shifted(int) const core::fragment::FragSet
ConstantLengthFragSet(Size frag_length)core::fragment::ConstantLengthFragSetinline
ConstantLengthFragSet(Size frag_length, std::string filename)core::fragment::ConstantLengthFragSet
ConstantLengthFragSet()core::fragment::ConstantLengthFragSetinline
ConstantLengthFragSet(FragSet const &fragments)core::fragment::ConstantLengthFragSet
empty() const overridecore::fragment::ConstantLengthFragSetinlinevirtual
empty_clone() const overridecore::fragment::ConstantLengthFragSetinlinevirtual
end() const overridecore::fragment::ConstantLengthFragSetvirtual
FragSet()core::fragment::FragSetinline
frames(core::Size pos, FrameList &frames) const core::fragment::FragSetinlinevirtual
frames_core::fragment::ConstantLengthFragSetprivate
generate_insert_map(kinematics::MoveMap const &mm, InsertMap &insert_map, InsertSize &insert_size) const core::fragment::FragSetvirtual
global_offset() const core::fragment::FragSetinline
global_offset(int)core::fragment::FragSet
insert_fragID_list(FragID_List &list)core::fragment::FragSet
max_frag_length() const core::fragment::FragSetinline
max_pos() const core::fragment::FragSetinline
min_pos() const core::fragment::FragSetinline
nonconst_begin() overridecore::fragment::ConstantLengthFragSetvirtual
nonconst_end() overridecore::fragment::ConstantLengthFragSetvirtual
nr_frames() const core::fragment::FragSet
overlapping_with_region(kinematics::MoveMap const &mm, core::Size start, core::Size end, core::Size min_overlap, core::Size min_length, FrameList &frames) const overridecore::fragment::ConstantLengthFragSetvirtual
Parent typedefcore::fragment::ConstantLengthFragSetprivate
read_fragment_file(std::string filename, Size top25=0, Size ncopies=1, bool bAnnotation=false)core::fragment::ConstantLengthFragSet
read_fragment_stream(std::string const &filename, std::string const &first_line, std::istream &data, Size top25=0, Size ncopies=1, bool bAnnotation=false)core::fragment::ConstantLengthFragSet
region(kinematics::MoveMap const &mm, core::Size start, core::Size end, core::Size, core::Size, FrameList &frames) const overridecore::fragment::ConstantLengthFragSetvirtual
region_all(core::Size start, core::Size end, core::Size min_overlap, core::Size min_length, FrameList &frames) const core::fragment::FragSetvirtual
region_simple(core::Size start, core::Size end, FrameList &frames) const core::fragment::FragSetinlinevirtual
set_max_frag_length(Size setting)core::fragment::FragSetinlineprotected
set_max_pos(Size pos)core::fragment::FragSetinlineprotected
set_min_pos(Size pos)core::fragment::FragSetinlineprotected
shift_by(int offset)core::fragment::FragSetvirtual
size() const core::fragment::FragSet
~ConstantLengthFragSet() overridecore::fragment::ConstantLengthFragSet
~FragSet() override=defaultcore::fragment::FragSet