Rosetta  2020.37
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protocols::dna_dock::PropagateClashCheckFilter Class Reference

#include <PropagateClashCheckFilter.hh>

Inheritance diagram for protocols::dna_dock::PropagateClashCheckFilter:
Inheritance graph
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Public Types

typedef protocols::filters::Filter Super
 
typedef protocols::filters::Filter Filter
 
typedef
protocols::filters::FilterOP 
FilterOP
 
typedef core::Real Real
 
typedef core::pose::Pose Pose
 
typedef utility::tag::TagCOP TagCOP
 
typedef basic::datacache::DataMap DataMap
 

Public Member Functions

 PropagateClashCheckFilter ()
 
 PropagateClashCheckFilter (core::Real const fa_rep_thresh, std::string default_bridge_type, core::Real omega, core::Real rise, core::Size num_repeats, core::Size prop_dir)
 
 PropagateClashCheckFilter (PropagateClashCheckFilter const &rval)
 
 ~PropagateClashCheckFilter () override
 
protocols::filters::FilterOP clone () const override
 
protocols::filters::FilterOP fresh_instance () const override
 
std::string name () const override
 
void set_fa_rep_thresh (core::Real fa_rep_thresh)
 
void set_default_bridge_type (std::string default_bridge_type)
 
void set_omega (core::Real omega)
 
void set_rise (core::Real rise)
 
void set_num_repeats (core::Size num_repeats)
 
core::Real get_fa_rep_thresh () const
 
std::string get_default_bridge_type () const
 
core::Real get_omega () const
 
core::Real get_rise () const
 
core::Size get_num_repeats () const
 
void parse_my_tag (TagCOP tag, basic::datacache::DataMap &) override
 parse xml More...
 
bool apply (core::pose::Pose const &pose) const override
 Returns true if the given pose passes the filter, false otherwise. More...
 
- Public Member Functions inherited from protocols::filters::Filter
 Filter ()
 
 Filter (std::string const &)
 
 Filter (Filter const &)
 
 ~Filter () override
 
virtual void report (std::ostream &, core::pose::Pose const &) const
 
virtual core::Real report_sm (core::pose::Pose const &) const
 used to report filter internals through a score or silent file More...
 
virtual std::string get_type () const
 
std::string get_user_defined_name () const
 
void set_user_defined_name (std::string const &name)
 
virtual void clear ()
 used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
 
virtual core::Real score (core::pose::Pose &pose)
 
virtual bool filter_provides_citation_info () const
 Does this filter provide information about how to cite it? More...
 
virtual utility::vector1
< basic::citation_manager::CitationCollectionCOP > 
provide_citation_info () const
 Provide the citation. More...
 
virtual bool filter_is_unpublished () const
 Does this filter indicate that it is unpublished (and, by extension, that the author should be included in publications resulting from it)? More...
 
virtual utility::vector1
< basic::citation_manager::UnpublishedModuleInfoCOP > 
provide_authorship_info_for_unpublished () const
 Provide a list of authors and their e-mail addresses, as strings. More...
 

Private Attributes

core::Real fa_rep_thresh_
 
std::string default_bridge_type_
 
core::Real omega_
 
core::Real rise_
 
core::Size num_repeats_
 
core::Size prop_dir_
 

Additional Inherited Members

- Protected Attributes inherited from protocols::filters::Filter
std::string scorename_
 

Member Typedef Documentation

Constructor & Destructor Documentation

protocols::dna_dock::PropagateClashCheckFilter::PropagateClashCheckFilter ( )
protocols::dna_dock::PropagateClashCheckFilter::PropagateClashCheckFilter ( core::Real const  fa_rep_thresh,
std::string  default_bridge_type,
core::Real  omega,
core::Real  rise,
core::Size  num_repeats,
core::Size  prop_dir 
)
protocols::dna_dock::PropagateClashCheckFilter::PropagateClashCheckFilter ( PropagateClashCheckFilter const &  rval)
default
protocols::dna_dock::PropagateClashCheckFilter::~PropagateClashCheckFilter ( )
overridedefault

Member Function Documentation

bool protocols::dna_dock::PropagateClashCheckFilter::apply ( core::pose::Pose const &  pose) const
overridevirtual
protocols::filters::FilterOP protocols::dna_dock::PropagateClashCheckFilter::clone ( ) const
overridevirtual
protocols::filters::FilterOP protocols::dna_dock::PropagateClashCheckFilter::fresh_instance ( ) const
overridevirtual
std::string protocols::dna_dock::PropagateClashCheckFilter::get_default_bridge_type ( ) const

References default_bridge_type_.

core::Real protocols::dna_dock::PropagateClashCheckFilter::get_fa_rep_thresh ( ) const

References fa_rep_thresh_.

core::Size protocols::dna_dock::PropagateClashCheckFilter::get_num_repeats ( ) const

References num_repeats_.

core::Real protocols::dna_dock::PropagateClashCheckFilter::get_omega ( ) const

References omega_.

core::Real protocols::dna_dock::PropagateClashCheckFilter::get_rise ( ) const

References rise_.

std::string protocols::dna_dock::PropagateClashCheckFilter::name ( ) const
inlineoverridevirtual

Reimplemented from protocols::filters::Filter.

void protocols::dna_dock::PropagateClashCheckFilter::parse_my_tag ( TagCOP  tag,
basic::datacache::DataMap &   
)
overridevirtual
void protocols::dna_dock::PropagateClashCheckFilter::set_default_bridge_type ( std::string  default_bridge_type)

References default_bridge_type_.

void protocols::dna_dock::PropagateClashCheckFilter::set_fa_rep_thresh ( core::Real  fa_rep_thresh)

References fa_rep_thresh_.

void protocols::dna_dock::PropagateClashCheckFilter::set_num_repeats ( core::Size  num_repeats)

References num_repeats_.

void protocols::dna_dock::PropagateClashCheckFilter::set_omega ( core::Real  omega)

References core::scoring::omega, and omega_.

void protocols::dna_dock::PropagateClashCheckFilter::set_rise ( core::Real  rise)

References rise_.

Member Data Documentation

std::string protocols::dna_dock::PropagateClashCheckFilter::default_bridge_type_
private
core::Real protocols::dna_dock::PropagateClashCheckFilter::fa_rep_thresh_
private
core::Size protocols::dna_dock::PropagateClashCheckFilter::num_repeats_
private
core::Real protocols::dna_dock::PropagateClashCheckFilter::omega_
private
core::Size protocols::dna_dock::PropagateClashCheckFilter::prop_dir_
private

Referenced by apply(), and parse_my_tag().

core::Real protocols::dna_dock::PropagateClashCheckFilter::rise_
private

The documentation for this class was generated from the following files: