protocols::dna_dock::PropagateClashCheckFilter Class Reference

#include <PropagateClashCheckFilter.hh>

Inheritance diagram for protocols::dna_dock::PropagateClashCheckFilter:

Public Types
typedef protocols::filters::Filter	Super
typedef protocols::filters::Filter	Filter
typedef protocols::filters::FilterOP	FilterOP
typedef core::Real	Real
typedef core::pose::Pose	Pose
typedef utility::tag::TagCOP	TagCOP
typedef basic::datacache::DataMap	DataMap

Public Member Functions
	PropagateClashCheckFilter ()
	PropagateClashCheckFilter (core::Real const fa_rep_thresh, std::string default_bridge_type, core::Real omega, core::Real rise, core::Size num_repeats, core::Size prop_dir)
	PropagateClashCheckFilter (PropagateClashCheckFilter const &rval)
	~PropagateClashCheckFilter () override
protocols::filters::FilterOP	clone () const override
protocols::filters::FilterOP	fresh_instance () const override
std::string	name () const override
void	set_fa_rep_thresh (core::Real fa_rep_thresh)
void	set_default_bridge_type (std::string default_bridge_type)
void	set_omega (core::Real omega)
void	set_rise (core::Real rise)
void	set_num_repeats (core::Size num_repeats)
core::Real	get_fa_rep_thresh () const
std::string	get_default_bridge_type () const
core::Real	get_omega () const
core::Real	get_rise () const
core::Size	get_num_repeats () const
void	parse_my_tag (TagCOP tag, basic::datacache::DataMap &) override
	parse xml More...
bool	apply (core::pose::Pose const &pose) const override
	Returns true if the given pose passes the filter, false otherwise. More...
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	~Filter () override
virtual void	report (std::ostream &, core::pose::Pose const &) const
virtual core::Real	report_sm (core::pose::Pose const &) const
	used to report filter internals through a score or silent file More...
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual core::Real	score (core::pose::Pose &pose)
virtual void	provide_citation_info (basic::citation_manager::CitationCollectionList &) const
	Provide citations to the passed CitationCollectionList Subclasses should add the info for themselves and any other classes they use. More...

Private Attributes
core::Real	fa_rep_thresh_
std::string	default_bridge_type_
core::Real	omega_
core::Real	rise_
core::Size	num_repeats_
core::Size	prop_dir_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

DataMap

typedef basic::datacache::DataMap protocols::dna_dock::PropagateClashCheckFilter::DataMap

Filter

typedef protocols::filters::Filter protocols::dna_dock::PropagateClashCheckFilter::Filter

FilterOP

typedef protocols::filters::FilterOP protocols::dna_dock::PropagateClashCheckFilter::FilterOP

Pose

typedef core::pose::Pose protocols::dna_dock::PropagateClashCheckFilter::Pose

Real

typedef core::Real protocols::dna_dock::PropagateClashCheckFilter::Real

Super

typedef protocols::filters::Filter protocols::dna_dock::PropagateClashCheckFilter::Super

TagCOP

typedef utility::tag::TagCOP protocols::dna_dock::PropagateClashCheckFilter::TagCOP

Constructor & Destructor Documentation

PropagateClashCheckFilter() [1/3]

protocols::dna_dock::PropagateClashCheckFilter::PropagateClashCheckFilter

(

)

PropagateClashCheckFilter() [2/3]

protocols::dna_dock::PropagateClashCheckFilter::PropagateClashCheckFilter	(	core::Real const	fa_rep_thresh,
		std::string	default_bridge_type,
		core::Real	omega,
		core::Real	rise,
		core::Size	num_repeats,
		core::Size	prop_dir
	)

PropagateClashCheckFilter() [3/3]

protocols::dna_dock::PropagateClashCheckFilter::PropagateClashCheckFilter ( PropagateClashCheckFilter const &  rval )

default

~PropagateClashCheckFilter()

protocols::dna_dock::PropagateClashCheckFilter::~PropagateClashCheckFilter ( )

overridedefault

Member Function Documentation

apply()

bool protocols::dna_dock::PropagateClashCheckFilter::apply ( core::pose::Pose const &  pose ) const

overridevirtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References core::pose::append_pose_to_pose(), default_bridge_type_, core::pose::Pose::energies(), core::scoring::fa_rep, fa_rep_thresh_, core::chemical::ResidueTypeBase::name3(), num_repeats_, core::scoring::omega, omega_, prop_dir_, core::pose::Pose::residue(), rise_, protocols::forge::remodel::rot_mat(), core::pose::Pose::size(), core::id::to_string(), core::scoring::Energies::total_energies(), protocols::TR(), trans(), protocols::matdes::trans_pose(), and core::conformation::Residue::type().

clone()

protocols::filters::FilterOP protocols::dna_dock::PropagateClashCheckFilter::clone ( ) const

overridevirtual

Implements protocols::filters::Filter.

fresh_instance()

protocols::filters::FilterOP protocols::dna_dock::PropagateClashCheckFilter::fresh_instance ( ) const

overridevirtual

Implements protocols::filters::Filter.

get_default_bridge_type()

std::string protocols::dna_dock::PropagateClashCheckFilter::get_default_bridge_type

(

)

const

References default_bridge_type_.

get_fa_rep_thresh()

core::Real protocols::dna_dock::PropagateClashCheckFilter::get_fa_rep_thresh

(

)

const

References fa_rep_thresh_.

get_num_repeats()

core::Size protocols::dna_dock::PropagateClashCheckFilter::get_num_repeats

(

)

const

References num_repeats_.

get_omega()

core::Real protocols::dna_dock::PropagateClashCheckFilter::get_omega

(

)

const

References omega_.

get_rise()

core::Real protocols::dna_dock::PropagateClashCheckFilter::get_rise

(

)

const

References rise_.

name()

std::string protocols::dna_dock::PropagateClashCheckFilter::name ( ) const

inlineoverridevirtual

Reimplemented from protocols::filters::Filter.

parse_my_tag()

void protocols::dna_dock::PropagateClashCheckFilter::parse_my_tag ( TagCOP  tag, basic::datacache::DataMap &    )

overridevirtual

parse xml

Reimplemented from protocols::filters::Filter.

References default_bridge_type_, fa_rep_thresh_, num_repeats_, omega_, prop_dir_, and rise_.

set_default_bridge_type()

void protocols::dna_dock::PropagateClashCheckFilter::set_default_bridge_type

(

std::string

default_bridge_type

)

References default_bridge_type_.

set_fa_rep_thresh()

void protocols::dna_dock::PropagateClashCheckFilter::set_fa_rep_thresh

(

core::Real

fa_rep_thresh

)

References fa_rep_thresh_.

set_num_repeats()

void protocols::dna_dock::PropagateClashCheckFilter::set_num_repeats

(

core::Size

num_repeats

)

References num_repeats_.

set_omega()

void protocols::dna_dock::PropagateClashCheckFilter::set_omega

(

core::Real

omega

)

References core::scoring::omega, and omega_.

set_rise()

void protocols::dna_dock::PropagateClashCheckFilter::set_rise

(

core::Real

rise

)

References rise_.

Member Data Documentation

default_bridge_type_

std::string protocols::dna_dock::PropagateClashCheckFilter::default_bridge_type_

private

Referenced by apply(), get_default_bridge_type(), parse_my_tag(), and set_default_bridge_type().

fa_rep_thresh_

core::Real protocols::dna_dock::PropagateClashCheckFilter::fa_rep_thresh_

private

Referenced by apply(), get_fa_rep_thresh(), parse_my_tag(), and set_fa_rep_thresh().

num_repeats_

core::Size protocols::dna_dock::PropagateClashCheckFilter::num_repeats_

private

Referenced by apply(), get_num_repeats(), parse_my_tag(), and set_num_repeats().

omega_

core::Real protocols::dna_dock::PropagateClashCheckFilter::omega_

private

Referenced by apply(), get_omega(), parse_my_tag(), and set_omega().

prop_dir_

core::Size protocols::dna_dock::PropagateClashCheckFilter::prop_dir_

private

Referenced by apply(), and parse_my_tag().

rise_

core::Real protocols::dna_dock::PropagateClashCheckFilter::rise_

private

Referenced by apply(), get_rise(), parse_my_tag(), and set_rise().

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The documentation for this class was generated from the following files:

• src/protocols/dna_dock/PropagateClashCheckFilter.hh
• src/protocols/dna_dock/PropagateClashCheckFilter.cc