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Rosetta
2021.07
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Classes | |
class | PairQueryExecutor |
struct | PairQuerySummaryStatistics |
class | SingleQueryExecutor |
struct | SingleQuerySummaryStatistics |
class | StructureData |
class | StructureDatabase |
class | StructurePairQuery |
struct | StructurePairQueryResult |
class | StructureSingleQuery |
struct | StructureSingleQueryResult |
Typedefs | |
typedef utility::pointer::shared_ptr < StructureDatabase > | StructureDatabaseOP |
typedef utility::pointer::shared_ptr < StructureDatabase const > | StructureDatabaseCOP |
typedef int64_t | Index |
typedef float | SearchReal |
Functions | |
void | to_json (nlohmann::json &j, const SingleQuerySummaryStatistics &s) |
void | from_json (const nlohmann::json &j, SingleQuerySummaryStatistics &s) |
void | to_json (nlohmann::json &j, const StructureSingleQueryResult &s) |
void | from_json (const nlohmann::json &j, StructureSingleQueryResult &s) |
void | to_json (nlohmann::json &j, const PairQuerySummaryStatistics &s) |
void | from_json (const nlohmann::json &j, PairQuerySummaryStatistics &s) |
void | to_json (nlohmann::json &j, const StructurePairQueryResult &s) |
void | from_json (const nlohmann::json &j, StructurePairQueryResult &s) |
template<typename Module > | |
void | bind_QueryDatabase (Module &m) |
typedef int64_t protocols::indexed_structure_store::search::Index |
typedef float protocols::indexed_structure_store::search::SearchReal |
typedef utility::pointer::shared_ptr<StructureDatabase const> protocols::indexed_structure_store::search::StructureDatabaseCOP |
typedef utility::pointer::shared_ptr<StructureDatabase> protocols::indexed_structure_store::search::StructureDatabaseOP |
void protocols::indexed_structure_store::search::bind_QueryDatabase | ( | Module & | m | ) |
References protocols::indexed_structure_store::search::StructurePairQuery::c_per_entry, protocols::indexed_structure_store::search::StructureSingleQuery::c_per_entry, protocols::indexed_structure_store::search::StructureData::chain_endpoints, protocols::indexed_structure_store::search::StructureData::coordinate_buffer, core::energy_methods::eval(), protocols::indexed_structure_store::search::PairQueryExecutor::execute(), protocols::indexed_structure_store::search::SingleQueryExecutor::execute(), protocols::indexed_structure_store::search::PairQueryExecutor::execute_structure(), protocols::indexed_structure_store::search::SingleQueryExecutor::execute_structure(), protocols::indexed_structure_store::search::PairQuerySummaryStatistics::fragments_considered, protocols::indexed_structure_store::search::SingleQuerySummaryStatistics::fragments_considered, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::fragments_expanded, protocols::indexed_structure_store::search::StructureData::get_fragment_centers_of_mass_copy(), protocols::indexed_structure_store::search::StructureData::get_fragment_indicies_copy(), protocols::indexed_structure_store::search::StructureDatabase::get_structure_data(), core::init::init(), protocols::indexed_structure_store::search::StructureDatabase::initialize(), protocols::indexed_structure_store::search::StructureSingleQuery::n_entry, protocols::indexed_structure_store::search::StructurePairQuery::n_entry_a, protocols::indexed_structure_store::search::StructurePairQuery::n_entry_b, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::pairs_aligned, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::pairs_considered, protocols::indexed_structure_store::search::StructureSingleQuery::q_buffer, protocols::indexed_structure_store::search::StructurePairQuery::q_buffer_a, protocols::indexed_structure_store::search::StructurePairQuery::q_buffer_b, protocols::indexed_structure_store::search::PairQueryExecutor::query_results, protocols::indexed_structure_store::search::SingleQueryExecutor::query_results, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::result_count, protocols::indexed_structure_store::search::SingleQuerySummaryStatistics::result_count, protocols::indexed_structure_store::search::StructurePairQuery::rmsd_tolerance, protocols::indexed_structure_store::search::StructureSingleQuery::rmsd_tolerance, protocols::indexed_structure_store::search::StructureData::structure_offset, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::structures_considered, and protocols::indexed_structure_store::search::SingleQuerySummaryStatistics::structures_considered.
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References protocols::indexed_structure_store::search::StructureSingleQueryResult::fragment_start, protocols::indexed_structure_store::search::StructureSingleQueryResult::fragment_structure_start, protocols::indexed_structure_store::search::StructureSingleQueryResult::result_rmsd, and protocols::indexed_structure_store::search::StructureSingleQueryResult::structure_index.
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References protocols::indexed_structure_store::search::PairQuerySummaryStatistics::fragments_considered, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::fragments_expanded, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::pairs_aligned, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::pairs_considered, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::result_count, and protocols::indexed_structure_store::search::PairQuerySummaryStatistics::structures_considered.
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References protocols::indexed_structure_store::search::StructurePairQueryResult::fragment_a_start, protocols::indexed_structure_store::search::StructurePairQueryResult::fragment_a_structure_start, protocols::indexed_structure_store::search::StructurePairQueryResult::fragment_b_start, protocols::indexed_structure_store::search::StructurePairQueryResult::fragment_b_structure_start, protocols::indexed_structure_store::search::StructurePairQueryResult::result_rmsd, and protocols::indexed_structure_store::search::StructurePairQueryResult::structure_index.
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References protocols::indexed_structure_store::search::StructureSingleQueryResult::fragment_start, protocols::indexed_structure_store::search::StructureSingleQueryResult::fragment_structure_start, protocols::indexed_structure_store::search::StructureSingleQueryResult::result_rmsd, and protocols::indexed_structure_store::search::StructureSingleQueryResult::structure_index.
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References protocols::indexed_structure_store::search::PairQuerySummaryStatistics::fragments_considered, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::fragments_expanded, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::pairs_aligned, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::pairs_considered, protocols::indexed_structure_store::search::PairQuerySummaryStatistics::result_count, and protocols::indexed_structure_store::search::PairQuerySummaryStatistics::structures_considered.
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References protocols::indexed_structure_store::search::StructurePairQueryResult::fragment_a_start, protocols::indexed_structure_store::search::StructurePairQueryResult::fragment_a_structure_start, protocols::indexed_structure_store::search::StructurePairQueryResult::fragment_b_start, protocols::indexed_structure_store::search::StructurePairQueryResult::fragment_b_structure_start, protocols::indexed_structure_store::search::StructurePairQueryResult::result_rmsd, and protocols::indexed_structure_store::search::StructurePairQueryResult::structure_index.