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core::conformation::parametric Namespace Reference

Classes

class  BooleanValuedParameter
 BooleanValuedParameter class, used to store a single Boolean-valued parameter for parametric backbone generation. More...
 
class  Parameter
 Parameter class, used to store a single parameter for parametric backbone generation. More...
 
struct  ParameterizationCalculatorProperties
 
class  Parameters
 Parameters class, used to store sets of parameters for parametric backbone generation. More...
 
class  ParametersSet
 ParametersSet class, used to store sets of parameters for parametric backbone generation. More...
 
class  ParametrizationCalculator
 ParametrizationCalculator class, used for parametric backbone generation. More...
 
class  RealValuedParameter
 RealValuedParameter class, used to store a single real-valued parameter for parametric backbone generation. More...
 
class  RealVectorValuedParameter
 RealVectorValuedParameter class, used to store a single vector-valued parameter for parametric backbone generation. More...
 
class  SizeValuedParameter
 SizeValuedParameter class, used to store a single core::Size-valued parameter for parametric backbone generation. More...
 
class  SizeVectorValuedParameter
 SizeVectorValuedParameter class, used to store a single utility::vector1<core::Size>-valued parameter for parametric backbone generation. More...
 

Typedefs

typedef
utility::pointer::weak_ptr
< BooleanValuedParameter
BooleanValuedParameterAP
 
typedef
utility::pointer::weak_ptr
< BooleanValuedParameter const > 
BooleanValuedParameterCAP
 
typedef
utility::pointer::shared_ptr
< BooleanValuedParameter
BooleanValuedParameterOP
 
typedef
utility::pointer::shared_ptr
< BooleanValuedParameter const > 
BooleanValuedParameterCOP
 
typedef utility::vector1
< BooleanValuedParameterOP
BooleanValuedParameterOPs
 
typedef utility::vector1
< BooleanValuedParameterCOP
BooleanValuedParameterCOPs
 
typedef utility::vector1
< BooleanValuedParameterCAP
BooleanValuedParameterCAPs
 
typedef
utility::pointer::weak_ptr
< Parameter
ParameterAP
 
typedef
utility::pointer::weak_ptr
< Parameter const > 
ParameterCAP
 
typedef
utility::pointer::shared_ptr
< Parameter
ParameterOP
 
typedef
utility::pointer::shared_ptr
< Parameter const > 
ParameterCOP
 
typedef utility::vector1
< ParameterOP
ParameterOPs
 
typedef utility::vector1
< ParameterCOP
ParameterCOPs
 
typedef utility::vector1
< ParameterCAP
ParameterCAPs
 
typedef
utility::pointer::weak_ptr
< Parameters
ParametersAP
 
typedef
utility::pointer::weak_ptr
< Parameters const > 
ParametersCAP
 
typedef
utility::pointer::shared_ptr
< Parameters
ParametersOP
 
typedef
utility::pointer::shared_ptr
< Parameters const > 
ParametersCOP
 
typedef utility::vector1
< ParametersOP
ParametersOPs
 
typedef utility::vector1
< ParametersCOP
ParametersCOPs
 
typedef utility::vector1
< ParametersCAP
ParametersCAPs
 
typedef
utility::pointer::weak_ptr
< ParametersSet
ParametersSetAP
 
typedef
utility::pointer::weak_ptr
< ParametersSet const > 
ParametersSetCAP
 
typedef
utility::pointer::shared_ptr
< ParametersSet
ParametersSetOP
 
typedef
utility::pointer::shared_ptr
< ParametersSet const > 
ParametersSetCOP
 
typedef utility::vector1
< ParametersSetOP
ParametersSetOPs
 
typedef utility::vector1
< ParametersSetCOP
ParametersSetCOPs
 
typedef utility::vector1
< ParametersSetCAP
ParametersSetCAPs
 
typedef
utility::pointer::weak_ptr
< ParametrizationCalculator
ParametrizationCalculatorAP
 
typedef
utility::pointer::weak_ptr
< ParametrizationCalculator
const > 
ParametrizationCalculatorCAP
 
typedef
utility::pointer::shared_ptr
< ParametrizationCalculator
ParametrizationCalculatorOP
 
typedef
utility::pointer::shared_ptr
< ParametrizationCalculator
const > 
ParametrizationCalculatorCOP
 
typedef utility::vector1
< ParametrizationCalculatorOP
ParametrizationCalculatorOPs
 
typedef utility::vector1
< ParametrizationCalculatorCOP
ParametrizationCalculatorCOPs
 
typedef utility::vector1
< ParametrizationCalculatorCAP
ParametrizationCalculatorCAPs
 
typedef
utility::pointer::weak_ptr
< RealValuedParameter
RealValuedParameterAP
 
typedef
utility::pointer::weak_ptr
< RealValuedParameter const > 
RealValuedParameterCAP
 
typedef
utility::pointer::shared_ptr
< RealValuedParameter
RealValuedParameterOP
 
typedef
utility::pointer::shared_ptr
< RealValuedParameter const > 
RealValuedParameterCOP
 
typedef utility::vector1
< RealValuedParameterOP
RealValuedParameterOPs
 
typedef utility::vector1
< RealValuedParameterCOP
RealValuedParameterCOPs
 
typedef utility::vector1
< RealValuedParameterCAP
RealValuedParameterCAPs
 
typedef
utility::pointer::weak_ptr
< RealVectorValuedParameter
RealVectorValuedParameterAP
 
typedef
utility::pointer::weak_ptr
< RealVectorValuedParameter
const > 
RealVectorValuedParameterCAP
 
typedef
utility::pointer::shared_ptr
< RealVectorValuedParameter
RealVectorValuedParameterOP
 
typedef
utility::pointer::shared_ptr
< RealVectorValuedParameter
const > 
RealVectorValuedParameterCOP
 
typedef utility::vector1
< RealVectorValuedParameterOP
RealVectorValuedParameterOPs
 
typedef utility::vector1
< RealVectorValuedParameterCOP
RealVectorValuedParameterCOPs
 
typedef utility::vector1
< RealVectorValuedParameterCAP
RealVectorValuedParameterCAPs
 
typedef
utility::pointer::weak_ptr
< SizeValuedParameter
SizeValuedParameterAP
 
typedef
utility::pointer::weak_ptr
< SizeValuedParameter const > 
SizeValuedParameterCAP
 
typedef
utility::pointer::shared_ptr
< SizeValuedParameter
SizeValuedParameterOP
 
typedef
utility::pointer::shared_ptr
< SizeValuedParameter const > 
SizeValuedParameterCOP
 
typedef utility::vector1
< SizeValuedParameterOP
SizeValuedParameterOPs
 
typedef utility::vector1
< SizeValuedParameterCOP
SizeValuedParameterCOPs
 
typedef utility::vector1
< SizeValuedParameterCAP
SizeValuedParameterCAPs
 
typedef
utility::pointer::weak_ptr
< SizeVectorValuedParameter
SizeVectorValuedParameterAP
 
typedef
utility::pointer::weak_ptr
< SizeVectorValuedParameter
const > 
SizeVectorValuedParameterCAP
 
typedef
utility::pointer::shared_ptr
< SizeVectorValuedParameter
SizeVectorValuedParameterOP
 
typedef
utility::pointer::shared_ptr
< SizeVectorValuedParameter
const > 
SizeVectorValuedParameterCOP
 
typedef utility::vector1
< SizeVectorValuedParameterOP
SizeVectorValuedParameterOPs
 
typedef utility::vector1
< SizeVectorValuedParameterCOP
SizeVectorValuedParameterCOPs
 
typedef utility::vector1
< SizeVectorValuedParameterCAP
SizeVectorValuedParameterCAPs
 

Enumerations

enum  ParameterType {
  PT_generic_real = 1, PT_generic_nonnegative_valued_real, PT_generic_positive_valued_real, PT_angle,
  PT_boolean, PT_generic_integer, PT_generic_whole_number, PT_generic_natural_number,
  PT_generic_integer_vector, PT_generic_whole_number_vector, PT_generic_natural_number_vector, PT_generic_real_vector,
  PT_generic_nonnegative_valued_real_vector, PT_generic_positive_valued_real_vector, PT_angle_vector, PT_invalid_type,
  PT_end_of_list = PT_invalid_type
}
 The types of parameters possible. More...
 
enum  RealPerturbationType { RPT_gaussian =1, RPT_uniform, RPT_unknown_type, RPT_end_of_list =RPT_unknown_type }
 The types of perturbations. More...
 

Functions

static basic::Tracer TR ("core.conformation.parametric.BooleanValuedParameter")
 
static basic::Tracer TR ("core.conformation.parametric.Parameter")
 
static basic::Tracer TR ("core.conformation.parametric.Parameters")
 
static basic::Tracer TR ("core.conformation.parametric.ParametersSet")
 
static basic::Tracer TR ("core.conformation.parametric.ParametrizationCalculator")
 
static basic::Tracer TR ("core.conformation.parametric.RealValuedParameter")
 
static basic::Tracer TR ("core.conformation.parametric.RealVectorValuedParameter")
 
static basic::Tracer TR ("core.conformation.parametric.SizeValuedParameter")
 
static basic::Tracer TR ("core.conformation.parametric.SizeVectorValuedParameter")
 

Typedef Documentation

typedef utility::pointer::weak_ptr< Parameter > core::conformation::parametric::ParameterAP
typedef utility::pointer::weak_ptr< Parameter const > core::conformation::parametric::ParameterCAP
typedef utility::pointer::shared_ptr< Parameter const > core::conformation::parametric::ParameterCOP
typedef utility::pointer::shared_ptr< Parameter > core::conformation::parametric::ParameterOP
typedef utility::pointer::weak_ptr< Parameters > core::conformation::parametric::ParametersAP
typedef utility::pointer::weak_ptr< Parameters const > core::conformation::parametric::ParametersCAP
typedef utility::pointer::shared_ptr< Parameters const > core::conformation::parametric::ParametersCOP
typedef utility::pointer::shared_ptr< Parameters > core::conformation::parametric::ParametersOP
typedef utility::pointer::weak_ptr< ParametersSet > core::conformation::parametric::ParametersSetAP
typedef utility::pointer::weak_ptr< ParametersSet const > core::conformation::parametric::ParametersSetCAP
typedef utility::pointer::shared_ptr< ParametersSet const > core::conformation::parametric::ParametersSetCOP
typedef utility::pointer::shared_ptr< ParametersSet > core::conformation::parametric::ParametersSetOP
typedef utility::pointer::shared_ptr< RealValuedParameter const > core::conformation::parametric::RealValuedParameterCOP
typedef utility::pointer::shared_ptr< SizeValuedParameter const > core::conformation::parametric::SizeValuedParameterCOP

Enumeration Type Documentation

The types of parameters possible.

Enumerator
PT_generic_real 
PT_generic_nonnegative_valued_real 
PT_generic_positive_valued_real 
PT_angle 
PT_boolean 
PT_generic_integer 
PT_generic_whole_number 
PT_generic_natural_number 
PT_generic_integer_vector 
PT_generic_whole_number_vector 
PT_generic_natural_number_vector 
PT_generic_real_vector 
PT_generic_nonnegative_valued_real_vector 
PT_generic_positive_valued_real_vector 
PT_angle_vector 
PT_invalid_type 
PT_end_of_list 

The types of perturbations.

If you add to this list, be sure to update the perturbation_type_string_from_enum() function.

Enumerator
RPT_gaussian 
RPT_uniform 
RPT_unknown_type 
RPT_end_of_list 

Function Documentation

static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.Parameter"  )
static
static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.SizeValuedParameter"  )
static
static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.RealVectorValuedParameter"  )
static
static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.BooleanValuedParameter"  )
static
static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.Parameters"  )
static
static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.SizeVectorValuedParameter"  )
static
static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.RealValuedParameter"  )
static
static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.ParametersSet"  )
static
static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.ParametrizationCalculator"  )
static