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Classes | Typedefs | Enumerations | Functions
core::conformation::parametric Namespace Reference

Classes

class  BooleanValuedParameter
 BooleanValuedParameter class, used to store a single Boolean-valued parameter for parametric backbone generation. More...
 
class  Parameter
 Parameter class, used to store a single parameter for parametric backbone generation. More...
 
class  Parameters
 Parameters class, used to store sets of parameters for parametric backbone generation. More...
 
class  ParametersSet
 ParametersSet class, used to store sets of parameters for parametric backbone generation. More...
 
struct  ParameterizationCalculatorProperties
 
class  ParametrizationCalculator
 ParametrizationCalculator class, used for parametric backbone generation. More...
 
class  RealValuedParameter
 RealValuedParameter class, used to store a single real-valued parameter for parametric backbone generation. More...
 
class  RealVectorValuedParameter
 RealVectorValuedParameter class, used to store a single vector-valued parameter for parametric backbone generation. More...
 
class  SizeValuedParameter
 SizeValuedParameter class, used to store a single core::Size-valued parameter for parametric backbone generation. More...
 
class  SizeVectorValuedParameter
 SizeVectorValuedParameter class, used to store a single utility::vector1<core::Size>-valued parameter for parametric backbone generation. More...
 

Typedefs

typedef utility::pointer::weak_ptr< BooleanValuedParameterBooleanValuedParameterAP
 
typedef utility::pointer::weak_ptr< BooleanValuedParameter const > BooleanValuedParameterCAP
 
typedef utility::pointer::shared_ptr< BooleanValuedParameterBooleanValuedParameterOP
 
typedef utility::pointer::shared_ptr< BooleanValuedParameter const > BooleanValuedParameterCOP
 
typedef utility::vector1< BooleanValuedParameterOPBooleanValuedParameterOPs
 
typedef utility::vector1< BooleanValuedParameterCOPBooleanValuedParameterCOPs
 
typedef utility::vector1< BooleanValuedParameterCAPBooleanValuedParameterCAPs
 
typedef utility::pointer::weak_ptr< ParameterParameterAP
 
typedef utility::pointer::weak_ptr< Parameter const > ParameterCAP
 
typedef utility::pointer::shared_ptr< ParameterParameterOP
 
typedef utility::pointer::shared_ptr< Parameter const > ParameterCOP
 
typedef utility::vector1< ParameterOPParameterOPs
 
typedef utility::vector1< ParameterCOPParameterCOPs
 
typedef utility::vector1< ParameterCAPParameterCAPs
 
typedef utility::pointer::weak_ptr< ParametersParametersAP
 
typedef utility::pointer::weak_ptr< Parameters const > ParametersCAP
 
typedef utility::pointer::shared_ptr< ParametersParametersOP
 
typedef utility::pointer::shared_ptr< Parameters const > ParametersCOP
 
typedef utility::vector1< ParametersOPParametersOPs
 
typedef utility::vector1< ParametersCOPParametersCOPs
 
typedef utility::vector1< ParametersCAPParametersCAPs
 
typedef utility::pointer::weak_ptr< ParametersSetParametersSetAP
 
typedef utility::pointer::weak_ptr< ParametersSet const > ParametersSetCAP
 
typedef utility::pointer::shared_ptr< ParametersSetParametersSetOP
 
typedef utility::pointer::shared_ptr< ParametersSet const > ParametersSetCOP
 
typedef utility::vector1< ParametersSetOPParametersSetOPs
 
typedef utility::vector1< ParametersSetCOPParametersSetCOPs
 
typedef utility::vector1< ParametersSetCAPParametersSetCAPs
 
typedef utility::pointer::weak_ptr< ParametrizationCalculatorParametrizationCalculatorAP
 
typedef utility::pointer::weak_ptr< ParametrizationCalculator const > ParametrizationCalculatorCAP
 
typedef utility::pointer::shared_ptr< ParametrizationCalculatorParametrizationCalculatorOP
 
typedef utility::pointer::shared_ptr< ParametrizationCalculator const > ParametrizationCalculatorCOP
 
typedef utility::vector1< ParametrizationCalculatorOPParametrizationCalculatorOPs
 
typedef utility::vector1< ParametrizationCalculatorCOPParametrizationCalculatorCOPs
 
typedef utility::vector1< ParametrizationCalculatorCAPParametrizationCalculatorCAPs
 
typedef utility::pointer::weak_ptr< RealValuedParameterRealValuedParameterAP
 
typedef utility::pointer::weak_ptr< RealValuedParameter const > RealValuedParameterCAP
 
typedef utility::pointer::shared_ptr< RealValuedParameterRealValuedParameterOP
 
typedef utility::pointer::shared_ptr< RealValuedParameter const > RealValuedParameterCOP
 
typedef utility::vector1< RealValuedParameterOPRealValuedParameterOPs
 
typedef utility::vector1< RealValuedParameterCOPRealValuedParameterCOPs
 
typedef utility::vector1< RealValuedParameterCAPRealValuedParameterCAPs
 
typedef utility::pointer::weak_ptr< RealVectorValuedParameterRealVectorValuedParameterAP
 
typedef utility::pointer::weak_ptr< RealVectorValuedParameter const > RealVectorValuedParameterCAP
 
typedef utility::pointer::shared_ptr< RealVectorValuedParameterRealVectorValuedParameterOP
 
typedef utility::pointer::shared_ptr< RealVectorValuedParameter const > RealVectorValuedParameterCOP
 
typedef utility::vector1< RealVectorValuedParameterOPRealVectorValuedParameterOPs
 
typedef utility::vector1< RealVectorValuedParameterCOPRealVectorValuedParameterCOPs
 
typedef utility::vector1< RealVectorValuedParameterCAPRealVectorValuedParameterCAPs
 
typedef utility::pointer::weak_ptr< SizeValuedParameterSizeValuedParameterAP
 
typedef utility::pointer::weak_ptr< SizeValuedParameter const > SizeValuedParameterCAP
 
typedef utility::pointer::shared_ptr< SizeValuedParameterSizeValuedParameterOP
 
typedef utility::pointer::shared_ptr< SizeValuedParameter const > SizeValuedParameterCOP
 
typedef utility::vector1< SizeValuedParameterOPSizeValuedParameterOPs
 
typedef utility::vector1< SizeValuedParameterCOPSizeValuedParameterCOPs
 
typedef utility::vector1< SizeValuedParameterCAPSizeValuedParameterCAPs
 
typedef utility::pointer::weak_ptr< SizeVectorValuedParameterSizeVectorValuedParameterAP
 
typedef utility::pointer::weak_ptr< SizeVectorValuedParameter const > SizeVectorValuedParameterCAP
 
typedef utility::pointer::shared_ptr< SizeVectorValuedParameterSizeVectorValuedParameterOP
 
typedef utility::pointer::shared_ptr< SizeVectorValuedParameter const > SizeVectorValuedParameterCOP
 
typedef utility::vector1< SizeVectorValuedParameterOPSizeVectorValuedParameterOPs
 
typedef utility::vector1< SizeVectorValuedParameterCOPSizeVectorValuedParameterCOPs
 
typedef utility::vector1< SizeVectorValuedParameterCAPSizeVectorValuedParameterCAPs
 

Enumerations

enum  ParameterType {
  PT_generic_real = 1 , PT_generic_nonnegative_valued_real , PT_generic_positive_valued_real , PT_angle ,
  PT_boolean , PT_generic_integer , PT_generic_whole_number , PT_generic_natural_number ,
  PT_generic_integer_vector , PT_generic_whole_number_vector , PT_generic_natural_number_vector , PT_generic_real_vector ,
  PT_generic_nonnegative_valued_real_vector , PT_generic_positive_valued_real_vector , PT_angle_vector , PT_invalid_type ,
  PT_end_of_list = PT_invalid_type
}
 The types of parameters possible. More...
 
enum  RealPerturbationType { RPT_gaussian =1 , RPT_uniform , RPT_unknown_type , RPT_end_of_list =RPT_unknown_type }
 The types of perturbations. More...
 

Functions

static basic::Tracer TR ("core.conformation.parametric.BooleanValuedParameter")
 
static basic::Tracer TR ("core.conformation.parametric.Parameter")
 
static basic::Tracer TR ("core.conformation.parametric.Parameters")
 
static basic::Tracer TR ("core.conformation.parametric.ParametersSet")
 
static basic::Tracer TR ("core.conformation.parametric.ParametrizationCalculator")
 
static basic::Tracer TR ("core.conformation.parametric.RealValuedParameter")
 
static basic::Tracer TR ("core.conformation.parametric.RealVectorValuedParameter")
 
static basic::Tracer TR ("core.conformation.parametric.SizeValuedParameter")
 
static basic::Tracer TR ("core.conformation.parametric.SizeVectorValuedParameter")
 

Typedef Documentation

◆ BooleanValuedParameterAP

◆ BooleanValuedParameterCAP

◆ BooleanValuedParameterCAPs

◆ BooleanValuedParameterCOP

◆ BooleanValuedParameterCOPs

◆ BooleanValuedParameterOP

◆ BooleanValuedParameterOPs

◆ ParameterAP

typedef utility::pointer::weak_ptr< Parameter > core::conformation::parametric::ParameterAP

◆ ParameterCAP

typedef utility::pointer::weak_ptr< Parameter const > core::conformation::parametric::ParameterCAP

◆ ParameterCAPs

◆ ParameterCOP

typedef utility::pointer::shared_ptr< Parameter const > core::conformation::parametric::ParameterCOP

◆ ParameterCOPs

◆ ParameterOP

typedef utility::pointer::shared_ptr< Parameter > core::conformation::parametric::ParameterOP

◆ ParameterOPs

◆ ParametersAP

typedef utility::pointer::weak_ptr< Parameters > core::conformation::parametric::ParametersAP

◆ ParametersCAP

typedef utility::pointer::weak_ptr< Parameters const > core::conformation::parametric::ParametersCAP

◆ ParametersCAPs

◆ ParametersCOP

typedef utility::pointer::shared_ptr< Parameters const > core::conformation::parametric::ParametersCOP

◆ ParametersCOPs

◆ ParametersOP

typedef utility::pointer::shared_ptr< Parameters > core::conformation::parametric::ParametersOP

◆ ParametersOPs

◆ ParametersSetAP

typedef utility::pointer::weak_ptr< ParametersSet > core::conformation::parametric::ParametersSetAP

◆ ParametersSetCAP

typedef utility::pointer::weak_ptr< ParametersSet const > core::conformation::parametric::ParametersSetCAP

◆ ParametersSetCAPs

◆ ParametersSetCOP

typedef utility::pointer::shared_ptr< ParametersSet const > core::conformation::parametric::ParametersSetCOP

◆ ParametersSetCOPs

◆ ParametersSetOP

typedef utility::pointer::shared_ptr< ParametersSet > core::conformation::parametric::ParametersSetOP

◆ ParametersSetOPs

◆ ParametrizationCalculatorAP

◆ ParametrizationCalculatorCAP

◆ ParametrizationCalculatorCAPs

◆ ParametrizationCalculatorCOP

◆ ParametrizationCalculatorCOPs

◆ ParametrizationCalculatorOP

◆ ParametrizationCalculatorOPs

◆ RealValuedParameterAP

◆ RealValuedParameterCAP

◆ RealValuedParameterCAPs

◆ RealValuedParameterCOP

typedef utility::pointer::shared_ptr< RealValuedParameter const > core::conformation::parametric::RealValuedParameterCOP

◆ RealValuedParameterCOPs

◆ RealValuedParameterOP

◆ RealValuedParameterOPs

◆ RealVectorValuedParameterAP

◆ RealVectorValuedParameterCAP

◆ RealVectorValuedParameterCAPs

◆ RealVectorValuedParameterCOP

◆ RealVectorValuedParameterCOPs

◆ RealVectorValuedParameterOP

◆ RealVectorValuedParameterOPs

◆ SizeValuedParameterAP

◆ SizeValuedParameterCAP

◆ SizeValuedParameterCAPs

◆ SizeValuedParameterCOP

typedef utility::pointer::shared_ptr< SizeValuedParameter const > core::conformation::parametric::SizeValuedParameterCOP

◆ SizeValuedParameterCOPs

◆ SizeValuedParameterOP

◆ SizeValuedParameterOPs

◆ SizeVectorValuedParameterAP

◆ SizeVectorValuedParameterCAP

◆ SizeVectorValuedParameterCAPs

◆ SizeVectorValuedParameterCOP

◆ SizeVectorValuedParameterCOPs

◆ SizeVectorValuedParameterOP

◆ SizeVectorValuedParameterOPs

Enumeration Type Documentation

◆ ParameterType

The types of parameters possible.

Enumerator
PT_generic_real 
PT_generic_nonnegative_valued_real 
PT_generic_positive_valued_real 
PT_angle 
PT_boolean 
PT_generic_integer 
PT_generic_whole_number 
PT_generic_natural_number 
PT_generic_integer_vector 
PT_generic_whole_number_vector 
PT_generic_natural_number_vector 
PT_generic_real_vector 
PT_generic_nonnegative_valued_real_vector 
PT_generic_positive_valued_real_vector 
PT_angle_vector 
PT_invalid_type 
PT_end_of_list 

◆ RealPerturbationType

The types of perturbations.

If you add to this list, be sure to update the perturbation_type_string_from_enum() function.

Enumerator
RPT_gaussian 
RPT_uniform 
RPT_unknown_type 
RPT_end_of_list 

Function Documentation

◆ TR() [1/9]

static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.BooleanValuedParameter"  )
static

◆ TR() [2/9]

static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.Parameter"  )
static

◆ TR() [3/9]

static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.Parameters"  )
static

◆ TR() [4/9]

static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.ParametersSet"  )
static

◆ TR() [5/9]

static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.ParametrizationCalculator"  )
static

◆ TR() [6/9]

static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.RealValuedParameter"  )
static

◆ TR() [7/9]

static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.RealVectorValuedParameter"  )
static

◆ TR() [8/9]

static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.SizeValuedParameter"  )
static

◆ TR() [9/9]

static basic::Tracer core::conformation::parametric::TR ( "core.conformation.parametric.SizeVectorValuedParameter"  )
static